Mercurial > repos > galaxyp > openms_msgfplusadapter

comparison readme.md @ 11:ca5e09f1b26f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 26556c08813e892b4d1eed0e98012601870cae5f
author galaxyp
date Wed, 20 Sep 2017 10:12:41 -0400
parents c68633e7e3ad
children fe225d593ece
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10:78414b93d3e0 11:ca5e09f1b26f
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78 * As last step you need to change manually the binary names of all external binaries you want to use in OpenMS. For example: 78 * As last step you need to change manually the binary names of all external binaries you want to use in OpenMS. For example:
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80 ``` 80 ```
81 sed -i '13 a\-fido_executable fido' wrappers/FidoAdapter.xml 81 sed -i '13 a\-fido_executable Fido' wrappers/FidoAdapter.xml
82 sed -i '13 a\-fidocp_executable fido_choose_parameters' wrappers/FidoAdapter.xml 82 sed -i '13 a\-fidocp_executable FidoChooseParameters' wrappers/FidoAdapter.xml
83 sed -i '13 a\-myrimatch_executable myrimatch' wrappers/MyriMatchAdapter.xml 83 sed -i '13 a\-myrimatch_executable myrimatch' wrappers/MyriMatchAdapter.xml
84 sed -i '13 a\-omssa_executable omssa' wrappers/OMSSAAdapter.xml 84 sed -i '13 a\-omssa_executable omssa' wrappers/OMSSAAdapter.xml
85 sed -i '13 a\-xtandem_executable xtandem' wrappers/XTandemAdapter.xml 85 sed -i '13 a\-xtandem_executable xtandem' wrappers/XTandemAdapter.xml
86 ``` 86 ```
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