Mercurial > repos > galaxyp > openms_msgfplusadapter

comparison MSGFPlusAdapter.xml @ 3:b1b95a6933f9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 43193e51cde5940f6fb6c9e64f8734a7a7e77315
author galaxyp
date Thu, 27 Apr 2017 15:58:05 -0400
parents 06987761999d
children 71e5b255a4ce
comparison
equal deleted inserted replaced
2:c4a893feb484 3:b1b95a6933f9
203 <param name="param_min_peptide_length" type="integer" min="1" optional="True" value="6" label="Minimum peptide length to consider (MS-GF+ parameter '-minLength')" help="(-min_peptide_length) "/> 203 <param name="param_min_peptide_length" type="integer" min="1" optional="True" value="6" label="Minimum peptide length to consider (MS-GF+ parameter '-minLength')" help="(-min_peptide_length) "/>
204 <param name="param_max_peptide_length" type="integer" min="1" optional="True" value="40" label="Maximum peptide length to consider (MS-GF+ parameter '-maxLength')" help="(-max_peptide_length) "/> 204 <param name="param_max_peptide_length" type="integer" min="1" optional="True" value="40" label="Maximum peptide length to consider (MS-GF+ parameter '-maxLength')" help="(-max_peptide_length) "/>
205 <param name="param_matches_per_spec" type="integer" min="1" optional="True" value="1" label="Number of matches per spectrum to be reported (MS-GF+ parameter '-n')" help="(-matches_per_spec) "/> 205 <param name="param_matches_per_spec" type="integer" min="1" optional="True" value="1" label="Number of matches per spectrum to be reported (MS-GF+ parameter '-n')" help="(-matches_per_spec) "/>
206 <param name="param_add_features" display="radio" type="boolean" truevalue="-add_features" falsevalue="" checked="false" optional="True" label="Output additional features - needed" help="(-add_features) e.g. by Percolator (default: basic scores only; MS-GF+ parameter '-addFeatures')"/> 206 <param name="param_add_features" display="radio" type="boolean" truevalue="-add_features" falsevalue="" checked="false" optional="True" label="Output additional features - needed" help="(-add_features) e.g. by Percolator (default: basic scores only; MS-GF+ parameter '-addFeatures')"/>
207 <param name="param_max_mods" type="integer" min="0" optional="True" value="2" label="Maximum number of modifications per peptide" help="(-max_mods) If this value is large, the search may take very long"/> 207 <param name="param_max_mods" type="integer" min="0" optional="True" value="2" label="Maximum number of modifications per peptide" help="(-max_mods) If this value is large, the search may take very long"/>
208 <repeat name="rep_param_fixed_modifications" min="0" max="1" title="param_fixed_modifications"> 208 <repeat name="rep_param_fixed_modifications" min="0" title="param_fixed_modifications">
209 <param name="param_fixed_modifications" type="select" optional="True" label="Fixed modifications, specified using UniMod (www.unimod.org) terms," help="(-fixed_modifications) e.g. 'Carbamidomethyl (C)'"> 209 <param name="param_fixed_modifications" type="select" optional="True" label="Fixed modifications, specified using UniMod (www.unimod.org) terms," help="(-fixed_modifications) e.g. 'Carbamidomethyl (C)'">
210 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> 210 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option>
211 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> 211 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option>
212 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> 212 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option>
213 <option value="2-succinyl (C)">2-succinyl (C)</option> 213 <option value="2-succinyl (C)">2-succinyl (C)</option>