Mercurial > repos > galaxyp > openms_msfraggeradapter

comparison OMSSAAdapter.patch @ 4:1ad0d0fd8696 draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms"
author galaxyp
date Mon, 14 Dec 2020 08:29:51 +0000
parents 1576fcc8a5fc
children
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3:1576fcc8a5fc 4:1ad0d0fd8696
1 --- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200
2 +++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200
3 @@ -22,6 +22,7 @@
4 mkdir database &&
5 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
6
7 +makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
8 ## Main program call
9
10 set -o pipefail &&