Mercurial > repos > galaxyp > openms_mascotadapter
diff MascotAdapter.xml @ 1:62b5e00c7493 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
| author | galaxyp |
|---|---|
| date | Tue, 18 Apr 2017 15:42:10 -0400 |
| parents | 33ec38d31255 |
| children | 734c84be99cb |
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--- a/MascotAdapter.xml Wed Mar 01 10:06:44 2017 -0500 +++ b/MascotAdapter.xml Tue Apr 18 15:42:10 2017 -0400 @@ -34,7 +34,12 @@ -peak_mass_tolerance $param_peak_mass_tolerance #end if #if $param_taxonomy: - -taxonomy $param_taxonomy + -taxonomy + #if " " in str($param_taxonomy): + "$param_taxonomy" + #else + $param_taxonomy + #end if #end if #if $rep_param_modifications: @@ -76,7 +81,12 @@ -hits "$param_hits" #end if #if $param_cleavage: - -cleavage $param_cleavage + -cleavage + #if " " in str($param_cleavage): + "$param_cleavage" + #else + $param_cleavage + #end if #end if #if $param_missed_cleavages: -missed_cleavages $param_missed_cleavages @@ -112,7 +122,12 @@ -boundary "$param_boundary" #end if #if $param_mass_type: - -mass_type $param_mass_type + -mass_type + #if " " in str($param_mass_type): + "$param_mass_type" + #else + $param_mass_type + #end if #end if #if $param_mascot_directory: -mascot_directory "$param_mascot_directory"