--- a/MascotAdapter.xml	Mon Feb 12 08:38:25 2018 -0500
+++ b/MascotAdapter.xml	Wed May 15 05:15:53 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Identification]-->
-<tool id="MascotAdapter" name="MascotAdapter" version="2.2.0.1">
+<tool id="MascotAdapter" name="MascotAdapter" version="2.3.0">
   <description>Annotates MS/MS spectra using Mascot.</description>
   <macros>
     <token name="@EXECUTABLE@">MascotAdapter</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MascotAdapter
+  <command detect_errors="aggressive"><![CDATA[MascotAdapter
 
 #if $param_in:
   -in $param_in
@@ -140,7 +140,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="txt" label="input file in mzData format" help="(-in) &lt;br&gt;Note: In mode 'mascot_out' a Mascot results file (.mascotXML) is read"/>
     <param name="param_mascot_in" display="radio" type="boolean" truevalue="-mascot_in" falsevalue="" checked="false" optional="True" label="if this flag is set the MascotAdapter will read in mzData and write Mascot generic format" help="(-mascot_in) "/>
@@ -222,7 +222,7 @@
       <option value=". . unclassified">. . unclassified</option>
       <option value=". . Species information unavailable">. . Species information unavailable</option>
     </param>
-    <repeat name="rep_param_modifications" min="0" max="1" title="param_modifications">
+    <repeat name="rep_param_modifications" min="0" title="param_modifications">
       <param name="param_modifications" type="text" size="30" label="the modifications i.e. Carboxymethyl (C)" help="(-modifications) ">
         <sanitizer>
           <valid initial="string.printable">
@@ -232,7 +232,7 @@
         </sanitizer>
       </param>
     </repeat>
-    <repeat name="rep_param_variable_modifications" min="0" max="1" title="param_variable_modifications">
+    <repeat name="rep_param_variable_modifications" min="0" title="param_variable_modifications">
       <param name="param_variable_modifications" type="text" size="30" label="the variable modifications i.e. Carboxymethyl (C)" help="(-variable_modifications) ">
         <sanitizer>
           <valid initial="string.printable">
@@ -337,5 +337,5 @@
   <help>Annotates MS/MS spectra using Mascot.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MascotAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MascotAdapter.html</help>
 </tool>