Mercurial > repos > galaxyp > openms_maprttransformer

comparison MapRTTransformer.xml @ 12:490742393ef7 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:57:54 -0400
parents 1b460a43ae29
children f4e76d1b9ef9
comparison
equal deleted inserted replaced
11:016f78426096 12:490742393ef7
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Map Alignment]--> 3 <!--Proposed Tool Section: [Map Alignment]-->
4 <tool id="MapRTTransformer" name="MapRTTransformer" version="2.2.0"> 4 <tool id="MapRTTransformer" name="MapRTTransformer" version="2.3.0">
5 <description>Applies retention time transformations to maps.</description> 5 <description>Applies retention time transformations to maps.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">MapRTTransformer</token> 7 <token name="@EXECUTABLE@">MapRTTransformer</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MapRTTransformer 13 <command detect_errors="aggressive"><![CDATA[MapRTTransformer
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
102 #if $adv_opts.adv_opts_selector=='advanced': 102 #if $adv_opts.adv_opts_selector=='advanced':
103 #if $adv_opts.param_force: 103 #if $adv_opts.param_force:
104 -force 104 -force
105 #end if 105 #end if
106 #end if 106 #end if
107 </command> 107 ]]></command>
108 <inputs> 108 <inputs>
109 <param name="param_in" type="data" format="mzml,featurexml,consensusxml,idxml" optional="True" label="Input file to transform (separated by blanks)" help="(-in) "/> 109 <param name="param_in" type="data" format="mzml,featurexml,consensusxml,idxml" optional="True" label="Input file to transform (separated by blanks)" help="(-in) "/>
110 <param name="param_trafo_in" type="data" format="trafoxml" optional="False" label="Transformation to apply" help="(-trafo_in) "/> 110 <param name="param_trafo_in" type="data" format="trafoxml" optional="False" label="Transformation to apply" help="(-trafo_in) "/>
111 <param name="param_invert" display="radio" type="boolean" truevalue="-invert" falsevalue="" checked="false" optional="True" label="Invert transformation (approximatively) before applying it" help="(-invert) "/> 111 <param name="param_invert" display="radio" type="boolean" truevalue="-invert" falsevalue="" checked="false" optional="True" label="Invert transformation (approximatively) before applying it" help="(-invert) "/>
112 <param name="param_store_original_rt" display="radio" type="boolean" truevalue="-store_original_rt" falsevalue="" checked="false" optional="True" label="Store the original retention times (before transformation) as meta data in the output file" help="(-store_original_rt) "/> 112 <param name="param_store_original_rt" display="radio" type="boolean" truevalue="-store_original_rt" falsevalue="" checked="false" optional="True" label="Store the original retention times (before transformation) as meta data in the output file" help="(-store_original_rt) "/>
159 <data name="param_trafo_out" format="trafoxml"/> 159 <data name="param_trafo_out" format="trafoxml"/>
160 </outputs> 160 </outputs>
161 <help>Applies retention time transformations to maps. 161 <help>Applies retention time transformations to maps.
162 162
163 163
164 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapRTTransformer.html</help> 164 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MapRTTransformer.html</help>
165 </tool> 165 </tool>