Mercurial > repos > galaxyp > openms_mapnormalizer

comparison MapNormalizer.xml @ 12:ef9eedba6d19 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:46:42 -0400
parents 3e369c73ebba
children c5ec10754228
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11:e6bd0d1dbca6 12:ef9eedba6d19
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Signal processing and preprocessing]--> 3 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
4 <tool id="MapNormalizer" name="MapNormalizer" version="2.2.0"> 4 <tool id="MapNormalizer" name="MapNormalizer" version="2.3.0">
5 <description>Normalizes peak intensities in an MS run.</description> 5 <description>Normalizes peak intensities in an MS run.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">MapNormalizer</token> 7 <token name="@EXECUTABLE@">MapNormalizer</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MapNormalizer 13 <command detect_errors="aggressive"><![CDATA[MapNormalizer
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
21 #if $adv_opts.adv_opts_selector=='advanced': 21 #if $adv_opts.adv_opts_selector=='advanced':
22 #if $adv_opts.param_force: 22 #if $adv_opts.param_force:
23 -force 23 -force
24 #end if 24 #end if
25 #end if 25 #end if
26 </command> 26 ]]></command>
27 <inputs> 27 <inputs>
28 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 28 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
29 <expand macro="advanced_options"> 29 <expand macro="advanced_options">
30 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 30 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
31 </expand> 31 </expand>
34 <data name="param_out" format="mzml"/> 34 <data name="param_out" format="mzml"/>
35 </outputs> 35 </outputs>
36 <help>Normalizes peak intensities in an MS run. 36 <help>Normalizes peak intensities in an MS run.
37 37
38 38
39 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapNormalizer.html</help> 39 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MapNormalizer.html</help>
40 </tool> 40 </tool>