Mercurial > repos > galaxyp > openms_mapnormalizer

comparison MapNormalizer.xml @ 0:59692e631ad1 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 09:56:45 -0500
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children 3e369c73ebba
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-1:000000000000 0:59692e631ad1
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
4 <tool id="MapNormalizer" name="MapNormalizer" version="2.1.0">
5 <description>Normalizes peak intensities in an MS run.</description>
6 <macros>
7 <token name="@EXECUTABLE@">MapNormalizer</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>MapNormalizer
14
15 #if $param_in:
16 -in $param_in
17 #end if
18 #if $param_out:
19 -out $param_out
20 #end if
21 #if $adv_opts.adv_opts_selector=='advanced':
22 #if $adv_opts.param_force:
23 -force
24 #end if
25 #end if
26 </command>
27 <inputs>
28 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
29 <expand macro="advanced_options">
30 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
31 </expand>
32 </inputs>
33 <outputs>
34 <data name="param_out" format="mzml"/>
35 </outputs>
36 <help>Normalizes peak intensities in an MS run.
37
38
39 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapNormalizer.html</help>
40 </tool>