Mercurial > repos > galaxyp > openms_mapalignerposeclustering

comparison macros.xml @ 0:c3d8064d43aa draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:18:00 -0400
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children be2c8a814fa6
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-1:000000000000 0:c3d8064d43aa
1 <?xml version='1.0' encoding='UTF-8'?>
2 <macros>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="2.3">openms</requirement>
6 <requirement type="package" version="15.12.15.2">xtandem</requirement>
7 <requirement type="package" version="1.0">fido</requirement>
8 <requirement type="package" version="2017.07.21">msgf_plus</requirement>
9 <yield/>
10 </requirements>
11 </xml>
12 <xml name="stdio">
13 <stdio>
14 <regex match="Could not allocate metaspace" level="fatal_oom" description="Java memory Exception"/>
15 <regex match="Cannot create VM thread" level="fatal_oom" description="Java memory Exception"/>
16 <regex match="qUncompress: could not allocate enough memory to uncompress data" level="fatal_oom" description="Java memory Exception"/>
17 </stdio>
18 </xml>
19 <xml name="references">
20 <citations>
21 <citation type="doi">doi:10.1186/1471-2105-9-163</citation>
22 </citations>
23 </xml>
24 <xml name="advanced_options">
25 <conditional name="adv_opts">
26 <param name="adv_opts_selector" type="select" label="Advanced Options">
27 <option value="basic" selected="True">Hide Advanced Options</option>
28 <option value="advanced">Show Advanced Options</option>
29 </param>
30 <when value="basic"/>
31 <when value="advanced">
32 <yield/>
33 </when>
34 </conditional>
35 </xml>
36 </macros>