Mercurial > repos > galaxyp > openms_labeledeval

comparison LabeledEval.xml @ 16:a501c0193c9c draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:15:40 +0000
parents 785f5e8022a4
children
comparison
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15:d67d5c8ceab1 16:a501c0193c9c
45 <param name="in" argument="-in" type="data" format="featurexml" optional="false" label="Feature result file" help=" select featurexml data sets(s)"/> 45 <param name="in" argument="-in" type="data" format="featurexml" optional="false" label="Feature result file" help=" select featurexml data sets(s)"/>
46 <param name="truth" argument="-truth" type="data" format="consensusxml" optional="false" label="Expected result file" help=" select consensusxml data sets(s)"/> 46 <param name="truth" argument="-truth" type="data" format="consensusxml" optional="false" label="Expected result file" help=" select consensusxml data sets(s)"/>
47 <param name="rt_tol" argument="-rt_tol" type="float" optional="true" value="20.0" label="Maximum allowed retention time deviation" help=""/> 47 <param name="rt_tol" argument="-rt_tol" type="float" optional="true" value="20.0" label="Maximum allowed retention time deviation" help=""/>
48 <param name="mz_tol" argument="-mz_tol" type="float" optional="true" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help=""/> 48 <param name="mz_tol" argument="-mz_tol" type="float" optional="true" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help=""/>
49 <expand macro="adv_opts_macro"> 49 <expand macro="adv_opts_macro">
50 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 50 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
51 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 51 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
52 <expand macro="list_string_san"/> 52 <expand macro="list_string_san"/>
53 </param> 53 </param>
54 </expand> 54 </expand>
55 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 55 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
56 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 56 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
57 </param> 57 </param>
58 </inputs> 58 </inputs>
59 <outputs> 59 <outputs>
60 <data name="stdout" format="txt" label="${tool.name} on ${on_string}: stdout"> 60 <data name="stdout" format="txt" label="${tool.name} on ${on_string}: stdout">
69 <expand macro="manutest_LabeledEval"/> 69 <expand macro="manutest_LabeledEval"/>
70 </tests> 70 </tests>
71 <help><![CDATA[ Evaluation tool for isotope-labeled quantitation experiments. 71 <help><![CDATA[ Evaluation tool for isotope-labeled quantitation experiments.
72 72
73 73
74 For more information, visit http://www.openms.de/documentation/UTILS_LabeledEval.html]]></help> 74 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_LabeledEval.html]]></help>
75 <expand macro="references"/> 75 <expand macro="references"/>
76 </tool> 76 </tool>