Mercurial > repos > galaxyp > openms_internalcalibration
diff InternalCalibration.xml @ 3:db26b0049ddf draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
author | galaxyp |
---|---|
date | Fri, 14 Jul 2017 18:53:09 -0400 |
parents | 25c355a398dc |
children | 66c8a9a2bfa7 |
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--- a/InternalCalibration.xml Thu Apr 27 12:55:50 2017 -0400 +++ b/InternalCalibration.xml Fri Jul 14 18:53:09 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Signal processing and preprocessing]--> -<tool id="InternalCalibration" name="InternalCalibration" version="2.1.0"> +<tool id="InternalCalibration" name="InternalCalibration" version="2.2.0"> <description>Applies an internal mass recalibration.</description> <macros> <token name="@EXECUTABLE@">InternalCalibration</token> @@ -115,7 +115,7 @@ </param> </repeat> <param name="param_RT_chunking" type="float" value="300.0" label="RT window (one-sided, i.e" help="(-RT_chunking) left->center, or center->right) around an MS scan in which calibrants are collected to build a model. Set to -1 to use ALL calibrants for all scans, i.e. a global model"/> - <param name="param_cal_id_in" type="data" format="featurexml,idxml" optional="True" label="Identifications or features whose peptide ID's serve as calibration masses" help="(-id_in) "/> + <param name="param_cal_id_in" type="data" format="idxml,featurexml" optional="True" label="Identifications or features whose peptide ID's serve as calibration masses" help="(-id_in) "/> <param name="param_cal_lock_in" type="data" format="tabular" optional="True" label="Input file containing reference m/z values (text file with each line as: m/z ms-level charge) which occur in all scans" help="(-lock_in) "/> <param name="param_cal_lock_require_mono" display="radio" type="boolean" truevalue="-cal:lock_require_mono" falsevalue="" checked="false" optional="True" label="Require all lock masses to be monoisotopic, i.e" help="(-lock_require_mono) not the iso1, iso2 etc ('charge' column is used to determine the spacing). Peaks which are not mono-isotopic are not used"/> <param name="param_cal_lock_require_iso" display="radio" type="boolean" truevalue="-cal:lock_require_iso" falsevalue="" checked="false" optional="True" label="Require all lock masses to have at least the +1 isotope" help="(-lock_require_iso) Peaks without isotope pattern are not used"/>