Mercurial > repos > galaxyp > openms_internalcalibration

comparison InternalCalibration.xml @ 6:66c8a9a2bfa7 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8fcd33df23901e111d6c18f450bd09cd8cb3819e
author galaxyp
date Tue, 08 Aug 2017 13:14:34 -0400
parents db26b0049ddf
children 9ea8cffda926
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5:1d00fbb539de 6:66c8a9a2bfa7
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Signal processing and preprocessing]--> 3 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
4 <tool id="InternalCalibration" name="InternalCalibration" version="2.2.0"> 4 <tool id="InternalCalibration" name="InternalCalibration" version="2.2.0.1">
5 <description>Applies an internal mass recalibration.</description> 5 <description>Applies an internal mass recalibration.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">InternalCalibration</token> 7 <token name="@EXECUTABLE@">InternalCalibration</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
100 #end if 100 #end if
101 #end if 101 #end if
102 </command> 102 </command>
103 <inputs> 103 <inputs>
104 <param name="param_in" type="data" format="mzml" optional="False" label="Input peak file" help="(-in) "/> 104 <param name="param_in" type="data" format="mzml" optional="False" label="Input peak file" help="(-in) "/>
105 <param name="param_rscript_executable" type="data" format="text" value="Rscript" label="Path to the Rscript executable (default: 'Rscript')" help="(-rscript_executable) "/> 105 <param name="param_rscript_executable" type="data" format="txt" value="Rscript" label="Path to the Rscript executable (default: 'Rscript')" help="(-rscript_executable) "/>
106 <param name="param_ppm_match_tolerance" type="float" value="25.0" label="Finding calibrants in raw data uses this tolerance (for lock masses and ID's)" help="(-ppm_match_tolerance) "/> 106 <param name="param_ppm_match_tolerance" type="float" value="25.0" label="Finding calibrants in raw data uses this tolerance (for lock masses and ID's)" help="(-ppm_match_tolerance) "/>
107 <repeat name="rep_param_ms_level" min="0" max="1" title="param_ms_level"> 107 <repeat name="rep_param_ms_level" min="0" max="1" title="param_ms_level">
108 <param name="param_ms_level" type="text" size="30" value="1 2 3" label="Target MS levels to apply the transformation onto" help="(-ms_level) Does not affect calibrant collection"> 108 <param name="param_ms_level" type="text" size="30" value="1 2 3" label="Target MS levels to apply the transformation onto" help="(-ms_level) Does not affect calibrant collection">
109 <sanitizer> 109 <sanitizer>
110 <valid initial="string.printable"> 110 <valid initial="string.printable">