Mercurial > repos > galaxyp > openms_internalcalibration

comparison InternalCalibration.xml @ 15:2f8b5aa12c99 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f5fcdd54599554099fb00b1973cc91a766ad246a"
author galaxyp
date Wed, 23 Sep 2020 14:48:09 +0000
parents 1774a8ba674d
children 03bec4747f9c
comparison
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14:1774a8ba674d 15:2f8b5aa12c99
147 </section> 147 </section>
148 <section name="goodness" title="Thresholds for accepting calibration success" help="" expanded="false"> 148 <section name="goodness" title="Thresholds for accepting calibration success" help="" expanded="false">
149 <param name="median" argument="-goodness:median" type="float" optional="true" value="4.0" label="The median ppm error of calibrated masses must be smaller than this threshold" help=""/> 149 <param name="median" argument="-goodness:median" type="float" optional="true" value="4.0" label="The median ppm error of calibrated masses must be smaller than this threshold" help=""/>
150 <param name="MAD" argument="-goodness:MAD" type="float" optional="true" value="2.0" label="The median absolute deviation of the ppm error of calibrated masses must be smaller than this threshold" help=""/> 150 <param name="MAD" argument="-goodness:MAD" type="float" optional="true" value="2.0" label="The median absolute deviation of the ppm error of calibrated masses must be smaller than this threshold" help=""/>
151 </section> 151 </section>
152 <section name="quality_control" title="Tables and plots to verify calibration performance" help="" expanded="false"/>
153 <expand macro="adv_opts_macro"> 152 <expand macro="adv_opts_macro">
154 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 153 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
155 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 154 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
156 <expand macro="list_string_san"/> 155 <expand macro="list_string_san"/>
157 </param> 156 </param>