diff InspectAdapter.xml @ 13:04f649bc6e79 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:56:59 -0400
parents 31c9e6e1bcb3
children
line wrap: on
line diff
--- a/InspectAdapter.xml	Mon Feb 12 09:01:34 2018 -0500
+++ b/InspectAdapter.xml	Wed May 15 06:56:59 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Identification]-->
-<tool id="InspectAdapter" name="InspectAdapter" version="2.2.0.1">
+<tool id="InspectAdapter" name="InspectAdapter" version="2.3.0">
   <description>Annotates MS/MS spectra using Inspect.</description>
   <macros>
     <token name="@EXECUTABLE@">InspectAdapter</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>InspectAdapter
+  <command detect_errors="aggressive"><![CDATA[InspectAdapter
 
 #if $param_in:
   -in $param_in
@@ -118,7 +118,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzxml,mzData" optional="False" label="input file in mzXML or mzData format" help="(-in) &lt;br&gt;Note: In mode 'inspect_out' an Inspect results file is read"/>
     <param name="param_inspect_in" display="radio" type="boolean" truevalue="-inspect_in" falsevalue="" checked="false" optional="True" label="if this flag is set the InspectAdapter will read in mzXML, &lt;br&gt;write an Inspect input file and generate a trie database" help="(-inspect_in) "/>
@@ -249,5 +249,5 @@
   <help>Annotates MS/MS spectra using Inspect.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_InspectAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_InspectAdapter.html</help>
 </tool>