Mercurial > repos > galaxyp > openms_idscoreswitcher

comparison IDScoreSwitcher.xml @ 12:6bae05c909fc draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:42:02 -0400
parents c7284758e92f
children 19145c23a927
comparison
equal deleted inserted replaced
11:52ce39d35ff2 12:6bae05c909fc
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="IDScoreSwitcher" name="IDScoreSwitcher" version="2.2.0"> 4 <tool id="IDScoreSwitcher" name="IDScoreSwitcher" version="2.3.0">
5 <description>Switches between different scores of peptide or protein hits in identification data</description> 5 <description>Switches between different scores of peptide or protein hits in identification data</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">IDScoreSwitcher</token> 7 <token name="@EXECUTABLE@">IDScoreSwitcher</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>IDScoreSwitcher 13 <command detect_errors="aggressive"><![CDATA[IDScoreSwitcher
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
41 #if $adv_opts.adv_opts_selector=='advanced': 41 #if $adv_opts.adv_opts_selector=='advanced':
42 #if $adv_opts.param_force: 42 #if $adv_opts.param_force:
43 -force 43 -force
44 #end if 44 #end if
45 #end if 45 #end if
46 </command> 46 ]]></command>
47 <inputs> 47 <inputs>
48 <param name="param_in" type="data" format="idxml" optional="False" label="Input file" help="(-in) "/> 48 <param name="param_in" type="data" format="idxml" optional="False" label="Input file" help="(-in) "/>
49 <param name="param_new_score" type="text" size="30" label="Name of the meta value to use as the new score" help="(-new_score) "> 49 <param name="param_new_score" type="text" size="30" label="Name of the meta value to use as the new score" help="(-new_score) ">
50 <sanitizer> 50 <sanitizer>
51 <valid initial="string.printable"> 51 <valid initial="string.printable">
83 <data name="param_out" format="idxml"/> 83 <data name="param_out" format="idxml"/>
84 </outputs> 84 </outputs>
85 <help>Switches between different scores of peptide or protein hits in identification data 85 <help>Switches between different scores of peptide or protein hits in identification data
86 86
87 87
88 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDScoreSwitcher.html</help> 88 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_IDScoreSwitcher.html</help>
89 </tool> 89 </tool>