Mercurial > repos > galaxyp > openms_idposteriorerrorprobability
view test-data/examples/FRACTIONS/BSA1_F2_aligned.featureXML @ 18:6daaa75ccb99 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e7368b7f178fbd1f08c28eea1b538add6943a65-dirty"
| author | galaxyp |
|---|---|
| date | Sun, 13 Dec 2020 15:03:50 +0000 |
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<?xml version="1.0" encoding="ISO-8859-1"?> <featureMap version="1.9" id="fm_14393388735853993828" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/schemas/FeatureXML_1_9.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> <dataProcessing completion_time="2017-05-08T14:09:47"> <software name="FeatureFinderCentroided" version="2.1.0" /> <processingAction name="Quantitation" /> <UserParam type="string" name="parameter: in" value="BSA1_F2.mzML"/> <UserParam type="string" name="parameter: out" value="BSA1_F2.featureXML"/> <UserParam type="string" name="parameter: log" value=""/> <UserParam type="int" name="parameter: debug" value="0"/> <UserParam type="int" name="parameter: threads" value="1"/> <UserParam type="string" name="parameter: no_progress" value="false"/> <UserParam type="string" name="parameter: test" value="false"/> <UserParam type="string" name="parameter: force" value="false"/> <UserParam type="string" name="parameter: seeds" value=""/> <UserParam type="string" name="parameter: out_mzq" value=""/> <UserParam type="string" name="parameter: algorithm:debug" value="false"/> <UserParam type="int" name="parameter: algorithm:intensity:bins" value="10"/> <UserParam type="float" name="parameter: algorithm:mass_trace:mz_tolerance" value="0.03"/> <UserParam type="int" name="parameter: algorithm:mass_trace:min_spectra" value="10"/> <UserParam type="int" name="parameter: algorithm:mass_trace:max_missing" value="1"/> <UserParam type="float" name="parameter: algorithm:mass_trace:slope_bound" value="0.1"/> <UserParam type="int" name="parameter: algorithm:isotopic_pattern:charge_low" value="1"/> <UserParam type="int" name="parameter: algorithm:isotopic_pattern:charge_high" value="4"/> <UserParam type="float" name="parameter: algorithm:isotopic_pattern:mz_tolerance" value="0.03"/> <UserParam type="float" name="parameter: algorithm:isotopic_pattern:intensity_percentage" value="10"/> <UserParam type="float" name="parameter: algorithm:isotopic_pattern:intensity_percentage_optional" value="0.1"/> <UserParam type="float" name="parameter: algorithm:isotopic_pattern:optional_fit_improvement" value="2"/> <UserParam type="float" name="parameter: algorithm:isotopic_pattern:mass_window_width" value="25"/> <UserParam type="float" name="parameter: algorithm:isotopic_pattern:abundance_12C" value="98.93"/> <UserParam type="float" name="parameter: algorithm:isotopic_pattern:abundance_14N" value="99.632"/> <UserParam type="float" name="parameter: algorithm:seed:min_score" value="0.8"/> <UserParam type="int" name="parameter: algorithm:fit:max_iterations" value="500"/> <UserParam type="float" name="parameter: algorithm:feature:min_score" value="0.7"/> <UserParam type="float" name="parameter: algorithm:feature:min_isotope_fit" value="0.8"/> <UserParam type="float" name="parameter: algorithm:feature:min_trace_score" value="0.5"/> <UserParam type="float" name="parameter: algorithm:feature:min_rt_span" value="0.333"/> <UserParam type="float" name="parameter: algorithm:feature:max_rt_span" value="2.5"/> <UserParam type="string" name="parameter: algorithm:feature:rt_shape" value="symmetric"/> <UserParam type="float" name="parameter: algorithm:feature:max_intersection" value="0.35"/> <UserParam type="string" name="parameter: algorithm:feature:reported_mz" value="monoisotopic"/> <UserParam type="float" name="parameter: algorithm:user-seed:rt_tolerance" value="5"/> <UserParam type="float" name="parameter: algorithm:user-seed:mz_tolerance" value="1.1"/> <UserParam type="float" name="parameter: algorithm:user-seed:min_score" value="0.5"/> <UserParam type="float" name="parameter: algorithm:debug:pseudo_rt_shift" value="500"/> </dataProcessing> <dataProcessing completion_time="2017-05-08T14:14:45"> <software name="IDMapper" version="2.1.0" /> <processingAction name="Identification mapping" /> <UserParam type="string" name="parameter: in" value="BSA1_F2.featureXML"/> <UserParam type="string" name="parameter: 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