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view test-data/examples/BSA/BSA2_OMSSA.idXML @ 18:6daaa75ccb99 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e7368b7f178fbd1f08c28eea1b538add6943a65-dirty"
author galaxyp
date Sun, 13 Dec 2020 15:03:50 +0000
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<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="../..//XSL/IdXML.xsl"?>
<IdXML version="1.3" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/schemas/IdXML_1_3.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
	<SearchParameters id="SP_0" db="18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta" db_version="" taxonomy="0" mass_type="monoisotopic" charges="+1-+3" enzyme="trypsin" missed_cleavages="1" precursor_peak_tolerance="0.05" peak_mass_tolerance="0.3" >
		<VariableModification name="Carbamidomethyl (C)" />
		<VariableModification name="Oxidation (M)" />
	</SearchParameters>
	<IdentificationRun date="2009-11-17T11:11:29" search_engine="OMSSA" search_engine_version="2.1.4" search_parameters_ref="SP_0" >
		<ProteinIdentification score_type="FDR" higher_score_better="false" significance_threshold="0" >
			<ProteinHit id="PH_0" accession="tr|A9EY18|A9EY18_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_1" accession="tr|A9FCX3|A9FCX3_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_2" accession="tr|A9G0B6|A9G0B6_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_3" accession="tr|A9G4J7|A9G4J7_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_4" accession="tr|A9G713|A9G713_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_5" accession="tr|A9G8K7|A9G8K7_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_6" accession="tr|A9GID7|A9GID7_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_7" accession="tr|A9GJA3|A9GJA3_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_8" accession="tr|A9GPT8|A9GPT8_SORC5" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_9" accession="P00761|TRYP_PIG" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_10" accession="P02769|ALBU_BOVIN" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
			<ProteinHit id="PH_11" accession="sp|O46375|TTHY_BOVIN" score="0" sequence="" >
				<UserParam type="float" name="OMSSA_score" value="0"/>
			</ProteinHit>
		</ProteinIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="368.832366943359" RT="1517.88525390625" >
			<PeptideHit score="0" sequence="DGDIEAEISR" charge="3" aa_before="K" aa_after="E" protein_refs="PH_0" >
				<UserParam type="float" name="OMSSA_score" value="0.000846175003530426"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="552.744079589844" RT="1520.14294433594" >
			<PeptideHit score="0" sequence="LAMTLAEAER" charge="2" aa_before="R" aa_after="A" protein_refs="PH_6" >
				<UserParam type="float" name="OMSSA_score" value="0.0384710999326793"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="508.245635986328" RT="1520.49755859375" >
			<PeptideHit score="0" sequence="SHCIAEVEK" charge="2" aa_before="K" aa_after="D" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.037770447058217"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="532.240295410156" RT="1521.95227050781" >
			<PeptideHit score="0.024390243902439" sequence="DGAGRCEAER" charge="2" aa_before="R" aa_after="L" protein_refs="PH_1" >
				<UserParam type="float" name="OMSSA_score" value="0.806790235287074"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="300.165985107422" RT="1666.36279296875" >
			<PeptideHit score="0.0476190476190476" sequence="LC(Carbamidomethyl)VLHEK" charge="3" aa_before="R" aa_after="T" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="1.01892240818698"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="449.744079589844" RT="1668.20104980469" >
			<PeptideHit score="0" sequence="LC(Carbamidomethyl)VLHEK" charge="2" aa_before="R" aa_after="T" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.00580345524445421"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="508.246765136719" RT="1672.48266601562" >
			<PeptideHit score="0" sequence="SHCIAEVEK" charge="2" aa_before="K" aa_after="D" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.0216899002039723"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="569.752807617188" RT="1683.76110839844" >
			<PeptideHit score="0" sequence="C(Carbamidomethyl)C(Carbamidomethyl)TESLVNR" charge="2" aa_before="K" aa_after="R" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.00490216571383733"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="443.71142578125" RT="1697.93835449219" >
			<PeptideHit score="0" sequence="DDSPDLPK" charge="2" aa_before="K" aa_after="L" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.00193445540304764"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="558.594543457031" RT="1725.173828125" >
			<PeptideHit score="0" sequence="QEPERNEC(Carbamidomethyl)FLSHK" charge="3" aa_before="K" aa_after="D" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.061156970596234"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="722.324951171875" RT="1728.01306152344" >
			<PeptideHit score="0" sequence="YIC(Carbamidomethyl)DNQDTISSK" charge="2" aa_before="K" aa_after="L" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="3.95473142553261e-07"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="331.152160644531" RT="1735.58251953125" >
			<PeptideHit score="0" sequence="ISPDFRTR" charge="3" aa_before="R" aa_after="G" protein_refs="PH_4" >
				<UserParam type="float" name="OMSSA_score" value="0.191889112315346"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="487.73193359375" RT="1764.072265625" >
			<PeptideHit score="0" sequence="DLGEEHFK" charge="2" aa_before="K" aa_after="G" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.095928319902701"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="325.491271972656" RT="1766.46264648438" >
			<PeptideHit score="0" sequence="DLGEEHFK" charge="3" aa_before="K" aa_after="G" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.0264434088914252"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="739.765686035156" RT="1790.20324707031" >
			<PeptideHit score="0" sequence="ETYGDMADC(Carbamidomethyl)C(Carbamidomethyl)EK" charge="2" aa_before="R" aa_after="Q" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.00225760111594976"/>
				<UserParam type="string" name="target_decoy" value="target"/>
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		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="616.232177734375" RT="1807.71862792969" >
			<PeptideHit score="0.024390243902439" sequence="AAC(Carbamidomethyl)AGEAGESPEEC(Carbamidomethyl)VGPR" charge="3" aa_before="K" aa_after="Y" protein_refs="PH_5" >
				<UserParam type="float" name="OMSSA_score" value="0.597874106010292"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
		</PeptideIdentification>
		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="674.286315917969" RT="1832.42224121094" >
			<PeptideHit score="0.024390243902439" sequence="VASLRETYGDM(Oxidation)ADC(Carbamidomethyl)C(Carbamidomethyl)EK" charge="3" aa_before="K" aa_after="Q" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.710129382201274"/>
				<UserParam type="string" name="target_decoy" value="target"/>
			</PeptideHit>
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		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="693.814819335938" RT="1846.52856445312" >
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		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="428.234222412109" RT="2133.27758789062" >
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		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="396.193115234375" RT="2159.67651367188" >
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				<UserParam type="float" name="OMSSA_score" value="0.0262935042571441"/>
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				<UserParam type="float" name="OMSSA_score" value="2.55714795835858e-07"/>
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				<UserParam type="float" name="OMSSA_score" value="0.00369772364772338"/>
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		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="499.880798339844" RT="2240.0859375" >
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				<UserParam type="float" name="OMSSA_score" value="0.670964311055543"/>
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		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="464.250061035156" RT="2250.060546875" >
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			<PeptideHit score="0" sequence="KVPQVSTPTLVEVSR" charge="3" aa_before="R" aa_after="S" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="0.00160478309243352"/>
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		<PeptideIdentification score_type="q-value" higher_score_better="false" significance_threshold="0" MZ="547.317260742188" RT="2320.04614257812" >
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			<PeptideHit score="0" sequence="LVVSTQTALA" charge="2" aa_before="K" protein_refs="PH_10" >
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			<PeptideHit score="0" sequence="RHPEYAVSVLLR" charge="3" aa_before="R" aa_after="L" protein_refs="PH_10" >
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				<UserParam type="string" name="target_decoy" value="target"/>
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			<PeptideHit score="0" sequence="RHPEYAVSVLLR" charge="3" aa_before="R" aa_after="L" protein_refs="PH_10" >
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			<PeptideHit score="0" sequence="RPC(Carbamidomethyl)FSALTPDETYVPK" charge="3" aa_before="R" aa_after="A" protein_refs="PH_10" >
				<UserParam type="float" name="OMSSA_score" value="5.78187927541962e-05"/>
				<UserParam type="string" name="target_decoy" value="target"/>
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				<UserParam type="string" name="target_decoy" value="target"/>
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</IdXML>