Mercurial > repos > galaxyp > openms_idposteriorerrorprobability
diff ctd/OpenSwathRewriteToFeatureXML.ctd @ 18:6daaa75ccb99 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e7368b7f178fbd1f08c28eea1b538add6943a65-dirty"
| author | galaxyp |
|---|---|
| date | Sun, 13 Dec 2020 15:03:50 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ctd/OpenSwathRewriteToFeatureXML.ctd Sun Dec 13 15:03:50 2020 +0000 @@ -0,0 +1,25 @@ +<?xml version="1.0" encoding="UTF-8"?> +<tool ctdVersion="1.7" version="2.6.0-pre-exported-20201001" name="OpenSwathRewriteToFeatureXML" docurl="http://www.openms.de/documentation/UTILS_OpenSwathRewriteToFeatureXML.html" category="Targeted Experiments" > +<description><![CDATA[Combines featureXML and mProphet tsv to FDR filtered featureXML.]]></description> +<manual><![CDATA[Combines featureXML and mProphet tsv to FDR filtered featureXML.]]></manual> +<citations> + <citation doi="10.1038/nmeth.3959" url="" /> +</citations> +<PARAMETERS version="1.7.0" xsi:noNamespaceSchemaLocation="https://raw.githubusercontent.com/OpenMS/OpenMS/develop/share/OpenMS/SCHEMAS/Param_1_7_0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> + <NODE name="OpenSwathRewriteToFeatureXML" description="Combines featureXML and mProphet tsv to FDR filtered featureXML."> + <ITEM name="version" value="2.6.0-pre-exported-20201001" type="string" description="Version of the tool that generated this parameters file." required="false" advanced="true" /> + <NODE name="1" description="Instance '1' section for 'OpenSwathRewriteToFeatureXML'"> + <ITEM name="csv" value="" type="input-file" description="mProphet tsv output file: "all_peakgroups.xls"" required="false" advanced="false" supported_formats="*.csv" /> + <ITEM name="featureXML" value="" type="input-file" description="input featureXML file" required="true" advanced="false" supported_formats="*.featureXML" /> + <ITEM name="out" value="" type="output-file" description="output featureXML file" required="true" advanced="false" supported_formats="*.featureXML" /> + <ITEM name="FDR_cutoff" value="-1.0" type="double" description="FDR cutoff (e.g. to remove all features with a an m_score above 0.05 use 0.05 here)" required="false" advanced="false" /> + <ITEM name="log" value="" type="string" description="Name of log file (created only when specified)" required="false" advanced="true" /> + <ITEM name="debug" value="0" type="int" description="Sets the debug level" required="false" advanced="true" /> + <ITEM name="threads" value="1" type="int" description="Sets the number of threads allowed to be used by the TOPP tool" required="false" advanced="false" /> + <ITEM name="no_progress" value="false" type="bool" description="Disables progress logging to command line" required="false" advanced="true" /> + <ITEM name="force" value="false" type="bool" description="Overrides tool-specific checks" required="false" advanced="true" /> + <ITEM name="test" value="false" type="bool" description="Enables the test mode (needed for internal use only)" required="false" advanced="true" /> + </NODE> + </NODE> +</PARAMETERS> +</tool>