Mercurial > repos > galaxyp > openms_idconflictresolver

annotate IDConflictResolver.xml @ 8:1a3de0da98a4 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 249cf6b4156b54fa3516db2b0ee338ce9c5bf5bd
author galaxyp
date Tue, 05 Sep 2017 17:57:50 -0400
parents 961008b5fe92
children f50773ab01f1
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1ddb1b5968a4 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [ID Processing]-->
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961008b5fe92 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
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4 <tool id="IDConflictResolver" name="IDConflictResolver" version="2.2.0">
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5 <description>Resolves ambiguous annotations of features with peptide identifications</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">IDConflictResolver</token>
1ddb1b5968a4 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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8 <import>macros.xml</import>
1ddb1b5968a4 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>IDConflictResolver
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14
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 #if $adv_opts.adv_opts_selector=='advanced':
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22 #if $adv_opts.param_force:
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23 -force
1ddb1b5968a4 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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24 #end if
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25 #end if
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26 </command>
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27 <inputs>
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28 <param name="param_in" type="data" format="featurexml,consensusxml" optional="False" label="Input file (data annotated with identifications)" help="(-in) "/>
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29 <expand macro="advanced_options">
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30 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
1ddb1b5968a4 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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31 </expand>
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32 </inputs>
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33 <outputs>
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34 <data name="param_out" metadata_source="param_in" format="input"/>
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35 </outputs>
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36 <help>Resolves ambiguous annotations of features with peptide identifications
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37
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38
1ddb1b5968a4 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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39 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDConflictResolver.html</help>
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40 </tool>