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comparison FuzzyDiff.xml @ 13:1c127bfb352d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:12:58 -0400
parents 0ebf10df4298
children a65191afea18
comparison
equal deleted inserted replaced
12:31c51056157c 13:1c127bfb352d
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="FuzzyDiff" name="FuzzyDiff" version="2.2.0.1"> 4 <tool id="FuzzyDiff" name="FuzzyDiff" version="2.3.0">
5 <description>Compares two files, tolerating numeric differences.</description> 5 <description>Compares two files, tolerating numeric differences.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">FuzzyDiff</token> 7 <token name="@EXECUTABLE@">FuzzyDiff</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FuzzyDiff 13 <command detect_errors="aggressive"><![CDATA[FuzzyDiff
14 14
15 #if $param_in1: 15 #if $param_in1:
16 -in1 $param_in1 16 -in1 $param_in1
17 #end if 17 #end if
18 #if $param_in2: 18 #if $param_in2:
59 #if $adv_opts.param_force: 59 #if $adv_opts.param_force:
60 -force 60 -force
61 #end if 61 #end if
62 #end if 62 #end if
63 &gt; $param_stdout 63 &gt; $param_stdout
64 </command> 64 ]]></command>
65 <inputs> 65 <inputs>
66 <param name="param_in1" type="data" format="txt" label="first input file" help="(-in1) "/> 66 <param name="param_in1" type="data" format="txt" label="first input file" help="(-in1) "/>
67 <param name="param_in2" type="data" format="txt" label="second input file" help="(-in2) "/> 67 <param name="param_in2" type="data" format="txt" label="second input file" help="(-in2) "/>
68 <param name="param_ratio" type="float" min="1.0" optional="True" value="1.0" label="acceptable relative erro" help="(-ratio) Only one of 'ratio' or 'absdiff' has to be satisfied. Use &quot;absdiff&quot; to deal with cases like &quot;zero vs. epsilon&quot;"/> 68 <param name="param_ratio" type="float" min="1.0" optional="True" value="1.0" label="acceptable relative erro" help="(-ratio) Only one of 'ratio' or 'absdiff' has to be satisfied. Use &quot;absdiff&quot; to deal with cases like &quot;zero vs. epsilon&quot;"/>
69 <param name="param_absdiff" type="float" min="0.0" optional="True" value="0.0" label="acceptable absolute difference" help="(-absdiff) Only one of 'ratio' or 'absdiff' has to be satisfied. "/> 69 <param name="param_absdiff" type="float" min="0.0" optional="True" value="0.0" label="acceptable absolute difference" help="(-absdiff) Only one of 'ratio' or 'absdiff' has to be satisfied. "/>
79 <remove value="&quot;"/> 79 <remove value="&quot;"/>
80 </valid> 80 </valid>
81 </sanitizer> 81 </sanitizer>
82 </param> 82 </param>
83 </repeat> 83 </repeat>
84 <repeat name="rep_param_matched_whitelist" min="0" max="1" title="param_matched_whitelist"> 84 <repeat name="rep_param_matched_whitelist" min="0" title="param_matched_whitelist">
85 <param name="param_matched_whitelist" type="text" size="30" label="Lines where one file contains one string and the other file another string are skipped. Input is given as list of colon separated tuples," help="(-matched_whitelist) e.g. String1:String2 String3:String4"> 85 <param name="param_matched_whitelist" type="text" size="30" label="Lines where one file contains one string and the other file another string are skipped. Input is given as list of colon separated tuples," help="(-matched_whitelist) e.g. String1:String2 String3:String4">
86 <sanitizer> 86 <sanitizer>
87 <valid initial="string.printable"> 87 <valid initial="string.printable">
88 <remove value="'"/> 88 <remove value="'"/>
89 <remove value="&quot;"/> 89 <remove value="&quot;"/>
98 <data name="param_stdout" format="txt" label="Output from stdout"/> 98 <data name="param_stdout" format="txt" label="Output from stdout"/>
99 </outputs> 99 </outputs>
100 <help>Compares two files, tolerating numeric differences. 100 <help>Compares two files, tolerating numeric differences.
101 101
102 102
103 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_FuzzyDiff.html</help> 103 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_FuzzyDiff.html</help>
104 </tool> 104 </tool>