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comparison FileMerger.xml @ 6:33e3f62dcf23 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ba082ee3343087740aaa741120b1f575646183a4
author galaxyp
date Fri, 18 Aug 2017 06:49:32 -0400
parents 397811d89637
children 37ae36c2b22d
comparison
equal deleted inserted replaced
5:07121f8410b9 6:33e3f62dcf23
24 #end if 24 #end if
25 #if $param_rt_concat_gap: 25 #if $param_rt_concat_gap:
26 -rt_concat:gap $param_rt_concat_gap 26 -rt_concat:gap $param_rt_concat_gap
27 #end if 27 #end if
28 28
29 #if $rep_param_rt_concat_trafo_out:
30 -rt_concat:trafo_out
31 #for token in $rep_param_rt_concat_trafo_out:
32 #if " " in str(token):
33 "$token.param_rt_concat_trafo_out"
34 #else
35 $token.param_rt_concat_trafo_out
36 #end if
37 #end for
38 #end if
39 #if $param_raw_rt_auto: 29 #if $param_raw_rt_auto:
40 -raw:rt_auto 30 -raw:rt_auto
41 #end if 31 #end if
42 32
43 #if $rep_param_raw_rt_custom: 33 #if $rep_param_raw_rt_custom:
72 </sanitizer> 62 </sanitizer>
73 </param> 63 </param>
74 <param name="param_annotate_file_origin" display="radio" type="boolean" truevalue="-annotate_file_origin" falsevalue="" checked="false" optional="True" label="Store the original filename in each feature using meta value &quot;file_origin&quot; (for featureXML and consensusXML only)" help="(-annotate_file_origin) "/> 64 <param name="param_annotate_file_origin" display="radio" type="boolean" truevalue="-annotate_file_origin" falsevalue="" checked="false" optional="True" label="Store the original filename in each feature using meta value &quot;file_origin&quot; (for featureXML and consensusXML only)" help="(-annotate_file_origin) "/>
75 <param name="param_rt_concat_gap" type="float" value="0.0" label="The amount of gap (in seconds) to insert between the RT ranges of different input files" help="(-gap) RT concatenation is enabled if a value &gt; 0 is set"/> 65 <param name="param_rt_concat_gap" type="float" value="0.0" label="The amount of gap (in seconds) to insert between the RT ranges of different input files" help="(-gap) RT concatenation is enabled if a value &gt; 0 is set"/>
76 <param name="param_raw_rt_auto" display="radio" type="boolean" truevalue="-raw:rt_auto" falsevalue="" checked="false" optional="True" label="Assign retention times automatically (integers starting at 1)" help="(-rt_auto) "/> 66 <param name="param_raw_rt_auto" display="radio" type="boolean" truevalue="-raw:rt_auto" falsevalue="" checked="false" optional="True" label="Assign retention times automatically (integers starting at 1)" help="(-rt_auto) "/>
77 <repeat name="rep_param_raw_rt_custom" min="0" max="1" title="param_raw_rt_custom"> 67 <repeat name="rep_param_raw_rt_custom" min="0" title="param_raw_rt_custom">
78 <param name="param_raw_rt_custom" type="text" size="30" value="0" label="List of custom retention times that are assigned to the files" help="(-rt_custom) The number of given retention times must be equal to the number of input files"> 68 <param name="param_raw_rt_custom" type="text" size="30" value="0" label="Custom retention times that are assigned to the files" help="(-rt_custom) The number of given retention times must be equal to the number of input files">
79 <sanitizer> 69 <sanitizer>
80 <valid initial="string.printable"> 70 <valid initial="string.printable">
81 <remove value="'"/> 71 <remove value="'"/>
82 <remove value="&quot;"/> 72 <remove value="&quot;"/>
83 </valid> 73 </valid>
89 <expand macro="advanced_options"> 79 <expand macro="advanced_options">
90 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 80 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
91 </expand> 81 </expand>
92 </inputs> 82 </inputs>
93 <outputs> 83 <outputs>
94 <data name="param_out" format="featurexml"/> 84 <data name="param_out" format="mzml"/>
95 <data name="param_rt_concat_trafo_out" format="trafoxml"/>
96 </outputs> 85 </outputs>
97 <help>Merges several MS files into one file. 86 <help>Merges several MS files into one file.
98 87
99 88
100 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileMerger.html</help> 89 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileMerger.html</help>