Mercurial > repos > galaxyp > openms_fileinfo

comparison FileInfo.xml @ 12:56c289a8baa2 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:42:59 -0400
parents 36f9e8188a1e
children faebd5d0756e
comparison
equal deleted inserted replaced
11:40f32bad7c4a 12:56c289a8baa2
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [File Handling]--> 3 <!--Proposed Tool Section: [File Handling]-->
4 <tool id="FileInfo" name="FileInfo" version="2.2.0"> 4 <tool id="FileInfo" name="FileInfo" version="2.3.0">
5 <description>Shows basic information about the file, such as data ranges and file type.</description> 5 <description>Shows basic information about the file, such as data ranges and file type.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">FileInfo</token> 7 <token name="@EXECUTABLE@">FileInfo</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FileInfo 13 <command detect_errors="aggressive"><![CDATA[FileInfo
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
45 #if $adv_opts.adv_opts_selector=='advanced': 45 #if $adv_opts.adv_opts_selector=='advanced':
46 #if $adv_opts.param_force: 46 #if $adv_opts.param_force:
47 -force 47 -force
48 #end if 48 #end if
49 #end if 49 #end if
50 </command> 50 ]]></command>
51 <inputs> 51 <inputs>
52 <param name="param_in" type="data" format="mzData,mzxml,mzml,dta,dta2d,mgf,featurexml,consensusxml,idxml,pepxml,fid,mzid,trafoxml" optional="False" label="input file" help="(-in) "/> 52 <param name="param_in" type="data" format="mzData,mzxml,mzml,dta,dta2d,mgf,featurexml,consensusxml,idxml,pepxml,fid,mzid,trafoxml,fasta" optional="False" label="input file" help="(-in) "/>
53 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/> 53 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/>
54 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/> 54 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/>
55 <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/> 55 <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/>
56 <param name="param_d" display="radio" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/> 56 <param name="param_d" display="radio" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/>
57 <param name="param_c" display="radio" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/> 57 <param name="param_c" display="radio" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/>
66 <data name="param_out_tsv" format="tabular"/> 66 <data name="param_out_tsv" format="tabular"/>
67 </outputs> 67 </outputs>
68 <help>Shows basic information about the file, such as data ranges and file type. 68 <help>Shows basic information about the file, such as data ranges and file type.
69 69
70 70
71 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help> 71 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FileInfo.html</help>
72 </tool> 72 </tool>