--- a/FidoAdapter.xml	Mon Feb 12 08:45:33 2018 -0500
+++ b/FidoAdapter.xml	Wed May 15 05:41:32 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [ID Processing]-->
-<tool id="FidoAdapter" name="FidoAdapter" version="2.2.0.1">
+<tool id="FidoAdapter" name="FidoAdapter" version="2.3.0">
   <description>Runs the protein inference engine Fido.</description>
   <macros>
     <token name="@EXECUTABLE@">FidoAdapter</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>FidoAdapter
+  <command detect_errors="aggressive"><![CDATA[FidoAdapter
 -fidocp_executable FidoChooseParameters
 -fido_executable Fido
 
@@ -66,7 +66,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml" optional="False" label="Input: identification results" help="(-in) "/>
     <param name="param_separate_runs" display="radio" type="boolean" truevalue="-separate_runs" falsevalue="" checked="false" optional="True" label="Process multiple protein identification runs in the input separately, don't merge them" help="(-separate_runs) Merging results in loss of descriptive information of the single protein identification runs"/>
@@ -96,5 +96,5 @@
   <help>Runs the protein inference engine Fido.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FidoAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FidoAdapter.html</help>
 </tool>