Mercurial > repos > galaxyp > openms_featurefindermultiplex
diff FeatureFinderMultiplex.xml @ 12:9e6747a47a04 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Wed, 15 May 2019 05:30:01 -0400 |
| parents | 10cf202b7035 |
| children | 7397f644139b |
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--- a/FeatureFinderMultiplex.xml Mon Feb 12 08:42:39 2018 -0500 +++ b/FeatureFinderMultiplex.xml Wed May 15 05:30:01 2019 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Quantitation]--> -<tool id="FeatureFinderMultiplex" name="FeatureFinderMultiplex" version="2.2.0.1"> +<tool id="FeatureFinderMultiplex" name="FeatureFinderMultiplex" version="2.3.0"> <description>Determination of peak ratios in LC-MS data</description> <macros> <token name="@EXECUTABLE@">FeatureFinderMultiplex</token> @@ -10,7 +10,7 @@ <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> - <command>FeatureFinderMultiplex + <command detect_errors="aggressive"><![CDATA[FeatureFinderMultiplex #if $param_in: -in $param_in @@ -131,7 +131,8 @@ -labels:ICPL10 $adv_opts.param_labels_ICPL10 #end if #end if -</command> +-threads "\${GALAXY_SLOTS:-1}" +]]></command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="LC-MS dataset in centroid or profile mode" help="(-in) "/> <param name="param_algorithm_labels" type="text" size="30" value="[][Lys8,Arg10]" label="Labels used for labelling the samples" help="(-labels) [...] specifies the labels for a single sample. For example <br> <br>[][Lys8,Arg10] ... SILAC <br>[][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC <br>[Dimethyl0][Dimethyl6] ... Dimethyl <br>[Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl <br>[ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL"> @@ -200,12 +201,12 @@ </expand> </inputs> <outputs> - <data name="param_out" format="consensusxml"/> - <data name="param_out_features" format="featurexml"/> - <data name="param_out_mzq" format="mzq"/> + <data name="param_out" format="consensusxml" label="${tool.name} on ${on_string}: consensusxml"/> + <data name="param_out_features" format="featurexml" label="${tool.name} on ${on_string}: featurexml"/> + <data name="param_out_mzq" format="mzq" label="${tool.name} on ${on_string}: mzq"/> </outputs> <help>Determination of peak ratios in LC-MS data -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderMultiplex.html</help> +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FeatureFinderMultiplex.html</help> </tool>