# HG changeset patch # User galaxyp # Date 1503081140 14400 # Node ID 8e09478f656f48e6b2e2c12f8e5ab1cde8fa701a # Parent 4ab503ec0fbf37bef3c95755e2d61bbc7edd2245 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8d70dbb6c61659d5ced433b168a2a4e32c9af677 diff -r 4ab503ec0fbf -r 8e09478f656f readme.md --- a/readme.md Fri Aug 18 13:43:01 2017 -0400 +++ b/readme.md Fri Aug 18 14:32:20 2017 -0400 @@ -69,6 +69,7 @@ omssa_executable pepnovo_executable \ xtandem_executable param_model_directory \ java_executable java_memory java_permgen \ + r_executable rt_concat_trafo_out \ -f /PATH/TO/filetypes.txt -m /PATH/TO/macros.xml \ -s PATH/TO/SKIP_TOOLS_FILES.txt ``` @@ -117,6 +118,14 @@ ]]> ``` + * In `MetaProSIP.xml` add `R` as a requirement: + + ``` + + r-base + + ``` + * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where): ```