Mercurial > repos > galaxyp > openms_externalcalibration

comparison ExternalCalibration.xml @ 12:edc3a71b9616 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:57:23 -0400
parents ce346d7073cb
children a4a8014f548a
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11:b81cfcfe37f5 12:edc3a71b9616
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Signal processing and preprocessing]--> 3 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
4 <tool id="ExternalCalibration" name="ExternalCalibration" version="2.2.0"> 4 <tool id="ExternalCalibration" name="ExternalCalibration" version="2.3.0">
5 <description>Applies an external mass recalibration.</description> 5 <description>Applies an external mass recalibration.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">ExternalCalibration</token> 7 <token name="@EXECUTABLE@">ExternalCalibration</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>ExternalCalibration 13 <command detect_errors="aggressive"><![CDATA[ExternalCalibration
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
41 #if $adv_opts.adv_opts_selector=='advanced': 41 #if $adv_opts.adv_opts_selector=='advanced':
42 #if $adv_opts.param_force: 42 #if $adv_opts.param_force:
43 -force 43 -force
44 #end if 44 #end if
45 #end if 45 #end if
46 </command> 46 ]]></command>
47 <inputs> 47 <inputs>
48 <param name="param_in" type="data" format="mzml" optional="False" label="Input peak file" help="(-in) "/> 48 <param name="param_in" type="data" format="mzml" optional="False" label="Input peak file" help="(-in) "/>
49 <param name="param_offset" type="float" value="0.0" label="Mass offset in ppm" help="(-offset) "/> 49 <param name="param_offset" type="float" value="0.0" label="Mass offset in ppm" help="(-offset) "/>
50 <param name="param_slope" type="float" value="0.0" label="Slope (dependent on m/z)" help="(-slope) "/> 50 <param name="param_slope" type="float" value="0.0" label="Slope (dependent on m/z)" help="(-slope) "/>
51 <param name="param_power" type="float" value="0.0" label="Power (dependent on m/z)" help="(-power) "/> 51 <param name="param_power" type="float" value="0.0" label="Power (dependent on m/z)" help="(-power) "/>
67 <data name="param_out" format="mzml"/> 67 <data name="param_out" format="mzml"/>
68 </outputs> 68 </outputs>
69 <help>Applies an external mass recalibration. 69 <help>Applies an external mass recalibration.
70 70
71 71
72 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ExternalCalibration.html</help> 72 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ExternalCalibration.html</help>
73 </tool> 73 </tool>