Mercurial > repos > galaxyp > openms_eicextractor

comparison EICExtractor.xml @ 12:f15c3baa8fb9 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:50:53 -0400
parents 65185780bb1b
children 475babaac0a5
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equal deleted inserted replaced
11:2395d7bd3d12 12:f15c3baa8fb9
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Quantitation]--> 3 <!--Proposed Tool Section: [Quantitation]-->
4 <tool id="EICExtractor" name="EICExtractor" version="2.2.0"> 4 <tool id="EICExtractor" name="EICExtractor" version="2.3.0">
5 <description>Extracts intensities from dedicates positions in a LC/MS map</description> 5 <description>Extracts intensities from dedicates positions in a LC/MS map</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">EICExtractor</token> 7 <token name="@EXECUTABLE@">EICExtractor</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>EICExtractor 13 <command detect_errors="aggressive"><![CDATA[EICExtractor
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
53 #end if 53 #end if
54 #if $adv_opts.param_auto_rt_SNThreshold: 54 #if $adv_opts.param_auto_rt_SNThreshold:
55 -auto_rt:SNThreshold $adv_opts.param_auto_rt_SNThreshold 55 -auto_rt:SNThreshold $adv_opts.param_auto_rt_SNThreshold
56 #end if 56 #end if
57 #end if 57 #end if
58 </command> 58 ]]></command>
59 <inputs> 59 <inputs>
60 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input raw data file" help="(-in) "> 60 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input raw data file" help="(-in) ">
61 <sanitizer> 61 <sanitizer>
62 <valid initial="string.printable"> 62 <valid initial="string.printable">
63 <remove value="'"/> 63 <remove value="'"/>
97 <data name="param_auto_rt_out_debug_TIC" format="mzml"/> 97 <data name="param_auto_rt_out_debug_TIC" format="mzml"/>
98 </outputs> 98 </outputs>
99 <help>Extracts intensities from dedicates positions in a LC/MS map 99 <help>Extracts intensities from dedicates positions in a LC/MS map
100 100
101 101
102 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_EICExtractor.html</help> 102 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_EICExtractor.html</help>
103 </tool> 103 </tool>