Mercurial > repos > galaxyp > openms_digestormotif

diff DigestorMotif.xml @ 3:e6f171ddbca4 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit daf6dfc513ede9b890125d9fff2c2657d834eea9
author galaxyp
date Fri, 14 Jul 2017 18:41:10 -0400
parents 3f4f738c7213
children 661cb880129a
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--- a/DigestorMotif.xml	Thu Apr 27 12:47:05 2017 -0400
+++ b/DigestorMotif.xml	Fri Jul 14 18:41:10 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="DigestorMotif" name="DigestorMotif" version="2.1.0">
+<tool id="DigestorMotif" name="DigestorMotif" version="2.2.0">
   <description>digests a protein database in-silico</description>
   <macros>
     <token name="@EXECUTABLE@">DigestorMotif</token>
@@ -55,25 +55,25 @@
     <param name="param_out_option" type="integer" value="1" label="indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)" help="(-out_option) "/>
     <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The enzyme used for peptide digestion" help="(-enzyme) ">
       <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
-      <option value="unspecific cleavage">unspecific cleavage</option>
-      <option value="Formic_acid">Formic_acid</option>
-      <option value="CNBr">CNBr</option>
+      <option value="Trypsin/P">Trypsin/P</option>
+      <option value="PepsinA">PepsinA</option>
+      <option value="Lys-C/P">Lys-C/P</option>
       <option value="Lys-C">Lys-C</option>
+      <option value="TrypChymo">TrypChymo</option>
+      <option value="Asp-N_ambic">Asp-N_ambic</option>
+      <option value="Arg-C">Arg-C</option>
       <option value="Trypsin" selected="true">Trypsin</option>
-      <option value="Arg-C">Arg-C</option>
-      <option value="proline endopeptidase">proline endopeptidase</option>
-      <option value="2-iodobenzoate">2-iodobenzoate</option>
-      <option value="Lys-C/P">Lys-C/P</option>
+      <option value="Chymotrypsin">Chymotrypsin</option>
+      <option value="Asp-N">Asp-N</option>
+      <option value="Formic_acid">Formic_acid</option>
       <option value="V8-DE">V8-DE</option>
-      <option value="leukocyte elastase">leukocyte elastase</option>
-      <option value="Trypsin/P">Trypsin/P</option>
-      <option value="Chymotrypsin">Chymotrypsin</option>
+      <option value="CNBr">CNBr</option>
+      <option value="proline endopeptidase">proline endopeptidase</option>
+      <option value="unspecific cleavage">unspecific cleavage</option>
+      <option value="no cleavage">no cleavage</option>
+      <option value="2-iodobenzoate">2-iodobenzoate</option>
       <option value="V8-E">V8-E</option>
-      <option value="Asp-N">Asp-N</option>
-      <option value="PepsinA">PepsinA</option>
-      <option value="no cleavage">no cleavage</option>
-      <option value="Asp-N_ambic">Asp-N_ambic</option>
-      <option value="TrypChymo">TrypChymo</option>
+      <option value="leukocyte elastase">leukocyte elastase</option>
     </param>
     <param name="param_motif" type="text" size="30" value="M" label="the motif for the restricted peptidome" help="(-motif) ">
       <sanitizer>