Mercurial > repos > galaxyp > openms_decoydatabase
diff DecoyDatabase.xml @ 12:b9cd14affc81 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Wed, 15 May 2019 05:45:08 -0400 |
| parents | 2ff597ce7194 |
| children | 8578f64391f1 |
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--- a/DecoyDatabase.xml Mon Feb 12 08:46:31 2018 -0500 +++ b/DecoyDatabase.xml Wed May 15 05:45:08 2019 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="DecoyDatabase" name="DecoyDatabase" version="2.2.0"> +<tool id="DecoyDatabase" name="DecoyDatabase" version="2.3.0"> <description>Create decoy protein DB from forward protein DB.</description> <macros> <token name="@EXECUTABLE@">DecoyDatabase</token> @@ -10,7 +10,7 @@ <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> - <command>DecoyDatabase + <command detect_errors="aggressive"><![CDATA[DecoyDatabase -in #for token in $param_in: @@ -46,7 +46,7 @@ -force #end if #end if -</command> +]]></command> <inputs> <param name="param_in" type="data" format="fasta" multiple="true" optional="False" size="30" label="Input FASTA file(s), each containing a database" help="(-in) It is recommended to include a contaminant database as well"> <sanitizer> @@ -82,12 +82,12 @@ </outputs> <tests> <test> - <param name="param_in" value="DecoyDatabase_input.fasta"/> - <output name="param_out" file="DecoyDatabase_output.fasta"/> + <param name="param_in" value="DecoyDatabase_input.fasta"/> + <output name="param_out" file="DecoyDatabase_output.fasta"/> </test> </tests> <help>Create decoy protein DB from forward protein DB. -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DecoyDatabase.html</help> +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_DecoyDatabase.html</help> </tool>