Mercurial > repos > galaxyp > openms_consensusmapnormalizer

comparison ConsensusMapNormalizer.xml @ 15:0afe60241a53 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 18:10:20 +0000
parents 6254b3dc8c93
children
comparison
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14:f072ad732da2 15:0afe60241a53
55 <expand macro="list_string_san"/> 55 <expand macro="list_string_san"/>
56 </param> 56 </param>
57 <param name="description_filter" argument="-description_filter" type="text" optional="true" value="" label="Use only features with description (partially) matching this regular expression for computing the normalization factors" help="Useful, e.g., if you have known house keeping proteins in your samples. When this parameter is empty or the regular expression matches the empty string, all features are used (even those without an ID). No effect if quantile normalization is used"> 57 <param name="description_filter" argument="-description_filter" type="text" optional="true" value="" label="Use only features with description (partially) matching this regular expression for computing the normalization factors" help="Useful, e.g., if you have known house keeping proteins in your samples. When this parameter is empty or the regular expression matches the empty string, all features are used (even those without an ID). No effect if quantile normalization is used">
58 <expand macro="list_string_san"/> 58 <expand macro="list_string_san"/>
59 </param> 59 </param>
60 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 60 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
61 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 61 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
62 <expand macro="list_string_san"/> 62 <expand macro="list_string_san"/>
63 </param> 63 </param>
64 </expand> 64 </expand>
65 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 65 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
66 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 66 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
67 </param> 67 </param>
68 </inputs> 68 </inputs>
69 <outputs> 69 <outputs>
70 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/> 70 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/>
77 <expand macro="manutest_ConsensusMapNormalizer"/> 77 <expand macro="manutest_ConsensusMapNormalizer"/>
78 </tests> 78 </tests>
79 <help><![CDATA[Normalizes maps of one consensusXML file 79 <help><![CDATA[Normalizes maps of one consensusXML file
80 80
81 81
82 For more information, visit http://www.openms.de/documentation/TOPP_ConsensusMapNormalizer.html]]></help> 82 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_ConsensusMapNormalizer.html]]></help>
83 <expand macro="references"/> 83 <expand macro="references"/>
84 </tool> 84 </tool>