Mercurial > repos > galaxyp > openms_additiveseries

comparison AdditiveSeries.xml @ 12:0b18759809a8 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:47:37 -0400
parents fe115138e0e6
children
comparison
equal deleted inserted replaced
11:cc66146ea179 12:0b18759809a8
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Quantitation]--> 3 <!--Proposed Tool Section: [Quantitation]-->
4 <tool id="AdditiveSeries" name="AdditiveSeries" version="2.2.0"> 4 <tool id="AdditiveSeries" name="AdditiveSeries" version="2.3.0">
5 <description>Computes an additive series to quantify a peptide in a set of samples.</description> 5 <description>Computes an additive series to quantify a peptide in a set of samples.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">AdditiveSeries</token> 7 <token name="@EXECUTABLE@">AdditiveSeries</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>AdditiveSeries 13 <command detect_errors="aggressive"><![CDATA[AdditiveSeries
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
57 #if $adv_opts.adv_opts_selector=='advanced': 57 #if $adv_opts.adv_opts_selector=='advanced':
58 #if $adv_opts.param_force: 58 #if $adv_opts.param_force:
59 -force 59 -force
60 #end if 60 #end if
61 #end if 61 #end if
62 </command> 62 ]]></command>
63 <inputs> 63 <inputs>
64 <param name="param_in" type="data" format="featurexml" multiple="true" optional="False" size="30" label="input files separated by blanks" help="(-in) "> 64 <param name="param_in" type="data" format="featurexml" multiple="true" optional="False" size="30" label="input files separated by blanks" help="(-in) ">
65 <sanitizer> 65 <sanitizer>
66 <valid initial="string.printable"> 66 <valid initial="string.printable">
67 <remove value="'"/> 67 <remove value="'"/>
69 </valid> 69 </valid>
70 </sanitizer> 70 </sanitizer>
71 </param> 71 </param>
72 <param name="param_mz_tolerance" type="float" value="1.0" label="Tolerance in m/z dimension" help="(-mz_tolerance) "/> 72 <param name="param_mz_tolerance" type="float" value="1.0" label="Tolerance in m/z dimension" help="(-mz_tolerance) "/>
73 <param name="param_rt_tolerance" type="float" value="1.0" label="Tolerance in RT dimension" help="(-rt_tolerance) "/> 73 <param name="param_rt_tolerance" type="float" value="1.0" label="Tolerance in RT dimension" help="(-rt_tolerance) "/>
74 <repeat name="rep_param_concentrations" min="1" max="1" title="param_concentrations"> 74 <repeat name="rep_param_concentrations" min="1" title="param_concentrations">
75 <param name="param_concentrations" type="text" size="30" value="0" label="List of spiked concentrations" help="(-concentrations) "> 75 <param name="param_concentrations" type="text" size="30" value="0" label="List of spiked concentrations" help="(-concentrations) ">
76 <sanitizer> 76 <sanitizer>
77 <valid initial="string.printable"> 77 <valid initial="string.printable">
78 <remove value="'"/> 78 <remove value="'"/>
79 <remove value="&quot;"/> 79 <remove value="&quot;"/>
102 <data name="param_out" format="xml"/> 102 <data name="param_out" format="xml"/>
103 </outputs> 103 </outputs>
104 <help>Computes an additive series to quantify a peptide in a set of samples. 104 <help>Computes an additive series to quantify a peptide in a set of samples.
105 105
106 106
107 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_AdditiveSeries.html</help> 107 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_AdditiveSeries.html</help>
108 </tool> 108 </tool>