--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/NoiseFilterSGolay.xml	Thu Apr 16 08:37:04 2015 -0400
@@ -0,0 +1,61 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="NoiseFilterSGolay" name="NoiseFilterSGolay" version="2.0.0">
+  <description>Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.</description>
+  <macros>
+    <token name="@EXECUTABLE@">NoiseFilterSGolay</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>NoiseFilterSGolay
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+-threads \${GALAXY_SLOTS:-24} 
+#if $param_algorithm_frame_length:
+  -algorithm:frame_length $param_algorithm_frame_length
+#end if
+#if $param_algorithm_polynomial_order:
+  -algorithm:polynomial_order $param_algorithm_polynomial_order
+#end if
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_processOption:
+  -processOption
+  #if " " in str($adv_opts.param_processOption):
+    "$adv_opts.param_processOption"
+  #else
+    $adv_opts.param_processOption
+  #end if
+#end if
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzml" optional="False" label="input raw data file" help="(-in) "/>
+    <param name="param_algorithm_frame_length" type="integer" value="11" label="The number of subsequent data points used for smoothing" help="(-frame_length) &lt;br&gt;This number has to be uneven. If it is not, 1 will be added"/>
+    <param name="param_algorithm_polynomial_order" type="integer" value="4" label="Order or the polynomial that is fitted" help="(-polynomial_order) "/>
+    <expand macro="advanced_options">
+      <param name="param_processOption" type="select" optional="True" value="inmemory" label="Whether to load all data and process them in-memory or whether to process the data on the fly (lowmemory) without loading the whole file into memory first" help="(-processOption) ">
+        <option value="inmemory">inmemory</option>
+        <option value="lowmemory">lowmemory</option>
+      </param>
+      <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" format="mzml"/>
+  </outputs>
+  <help>**What it does**
+
+Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_NoiseFilterSGolay.html</help>
+  <expand macro="references"/>
+</tool>