Mercurial > repos > galaxyp > openms
diff IDSplitter.xml @ 0:3070d71e0e5c draft
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 16 Apr 2015 08:37:04 -0400 |
| parents | |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IDSplitter.xml Thu Apr 16 08:37:04 2015 -0400 @@ -0,0 +1,45 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="IDSplitter" name="IDSplitter" version="2.0.0"> + <description>Splits protein/peptide identifications off of annotated data files</description> + <macros> + <token name="@EXECUTABLE@">IDSplitter</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>IDSplitter + +#if $param_in: + -in $param_in +#end if +#if $param_out: + -out $param_out +#end if +#if $param_id_out: + -id_out $param_id_out +#end if +-threads \${GALAXY_SLOTS:-24} +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_force: + -force +#end if +#end if +</command> + <inputs> + <param name="param_in" type="data" format="featurexml,consensusxml,mzml" optional="False" label="Input file (data annotated with identifications)" help="(-in) "/> + <expand macro="advanced_options"> + <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> + </expand> + </inputs> + <outputs> + <data name="param_out" metadata_source="param_in" format="input"/> + <data name="param_id_out" format="idxml"/> + </outputs> + <help>**What it does** + +Splits protein/peptide identifications off of annotated data files + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDSplitter.html</help> + <expand macro="references"/> +</tool>
