--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Digestor.xml	Thu Apr 16 08:37:04 2015 -0400
@@ -0,0 +1,77 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="Digestor" name="Digestor" version="2.0.0">
+  <description>Digests a protein database in-silico.</description>
+  <macros>
+    <token name="@EXECUTABLE@">Digestor</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>Digestor
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+#if $param_out_type:
+  -out_type
+  #if " " in str($param_out_type):
+    "$param_out_type"
+  #else
+    $param_out_type
+  #end if
+#end if
+#if $param_missed_cleavages:
+  -missed_cleavages $param_missed_cleavages
+#end if
+#if $param_min_length:
+  -min_length $param_min_length
+#end if
+#if $param_max_length:
+  -max_length $param_max_length
+#end if
+#if $param_enzyme:
+  -enzyme
+  #if " " in str($param_enzyme):
+    "$param_enzyme"
+  #else
+    $param_enzyme
+  #end if
+#end if
+-threads \${GALAXY_SLOTS:-24} 
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="fasta" optional="False" label="input file" help="(-in) "/>
+    <param name="param_out_type" type="select" optional="True" label="Set this if you cannot control the filename of 'out'," help="(-out_type) e.g., in TOPPAS">
+      <option value="idXML">idXML</option>
+      <option value="fasta">fasta</option>
+    </param>
+    <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="The number of allowed missed cleavages" help="(-missed_cleavages) "/>
+    <param name="param_min_length" type="integer" value="6" label="Minimum length of peptide" help="(-min_length) "/>
+    <param name="param_max_length" type="integer" value="40" label="Maximum length of peptide" help="(-max_length) "/>
+    <param name="param_enzyme" type="select" optional="True" value="Trypsin" label="The type of digestion enzyme" help="(-enzyme) ">
+      <option value="Trypsin">Trypsin</option>
+      <option value="none">none</option>
+    </param>
+    <expand macro="advanced_options">
+      <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" format="fasta"/>
+  </outputs>
+  <help>**What it does**
+
+Digests a protein database in-silico.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_Digestor.html</help>
+  <expand macro="references"/>
+</tool>