--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ConsensusMapNormalizer.xml	Thu Apr 16 08:37:04 2015 -0400
@@ -0,0 +1,58 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="ConsensusMapNormalizer" name="ConsensusMapNormalizer" version="2.0.0">
+  <description>Normalizes maps of one consensusXML file</description>
+  <macros>
+    <token name="@EXECUTABLE@">ConsensusMapNormalizer</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>ConsensusMapNormalizer
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+#if $param_algorithm_type:
+  -algorithm_type
+  #if " " in str($param_algorithm_type):
+    "$param_algorithm_type"
+  #else
+    $param_algorithm_type
+  #end if
+#end if
+#if $param_ratio_threshold:
+  -ratio_threshold $param_ratio_threshold
+#end if
+-threads \${GALAXY_SLOTS:-24} 
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="consensusxml" optional="False" label="input file" help="(-in) "/>
+    <param name="param_algorithm_type" type="select" optional="True" value="robust_regression" label="The normalization algorithm that is applied" help="(-algorithm_type) ">
+      <option value="robust_regression">robust_regression</option>
+      <option value="median">median</option>
+      <option value="quantile">quantile</option>
+    </param>
+    <param name="param_ratio_threshold" type="float" min="0.001" max="1.0" optional="True" value="0.67" label="Only for 'robust_regression': the parameter is used to distinguish between non-outliers (ratio_threshold &lt; intensity ratio &lt; 1/ratio_threshold) and outliers" help="(-ratio_threshold) "/>
+    <expand macro="advanced_options">
+      <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" format="consensusxml"/>
+  </outputs>
+  <help>**What it does**
+
+Normalizes maps of one consensusXML file
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ConsensusMapNormalizer.html</help>
+  <expand macro="references"/>
+</tool>