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comparison LabeledEval.xml @ 0:3070d71e0e5c draft

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author bgruening
date Thu, 16 Apr 2015 08:37:04 -0400
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-1:000000000000 0:3070d71e0e5c
1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="LabeledEval" name="LabeledEval" version="2.0.0">
3 <description> Evaluation tool for isotope-labeled quantitation experiments.</description>
4 <macros>
5 <token name="@EXECUTABLE@">LabeledEval</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>LabeledEval
11
12 #if $param_in:
13 -in $param_in
14 #end if
15 #if $param_truth:
16 -truth $param_truth
17 #end if
18 #if $param_rt_tol:
19 -rt_tol $param_rt_tol
20 #end if
21 #if $param_mz_tol:
22 -mz_tol $param_mz_tol
23 #end if
24 -threads \${GALAXY_SLOTS:-24}
25 #if $adv_opts.adv_opts_selector=='advanced':
26 #if $adv_opts.param_force:
27 -force
28 #end if
29 #end if
30 &gt; $param_stdout
31 </command>
32 <inputs>
33 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature result file" help="(-in) "/>
34 <param name="param_truth" type="data" format="consensusxml" optional="False" label="Expected result file" help="(-truth) "/>
35 <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol) "/>
36 <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol) "/>
37 <expand macro="advanced_options">
38 <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
39 </expand>
40 </inputs>
41 <outputs>
42 <data name="param_stdout" format="text" label="Output from stdout"/>
43 </outputs>
44 <help>**What it does**
45
46 Evaluation tool for isotope-labeled quantitation experiments.
47
48
49 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help>
50 <expand macro="references"/>
51 </tool>