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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="LabeledEval" name="LabeledEval" version="2.0.0">
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3 <description> Evaluation tool for isotope-labeled quantitation experiments.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">LabeledEval</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>LabeledEval
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11
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12 #if $param_in:
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13 -in $param_in
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14 #end if
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15 #if $param_truth:
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16 -truth $param_truth
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17 #end if
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18 #if $param_rt_tol:
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19 -rt_tol $param_rt_tol
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20 #end if
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21 #if $param_mz_tol:
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22 -mz_tol $param_mz_tol
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23 #end if
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24 -threads \${GALAXY_SLOTS:-24}
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25 #if $adv_opts.adv_opts_selector=='advanced':
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26 #if $adv_opts.param_force:
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27 -force
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28 #end if
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29 #end if
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30 > $param_stdout
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31 </command>
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32 <inputs>
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33 <param name="param_in" type="data" format="featurexml" optional="False" label="Feature result file" help="(-in) "/>
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34 <param name="param_truth" type="data" format="consensusxml" optional="False" label="Expected result file" help="(-truth) "/>
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35 <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol) "/>
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36 <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol) "/>
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37 <expand macro="advanced_options">
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38 <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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39 </expand>
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40 </inputs>
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41 <outputs>
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42 <data name="param_stdout" format="text" label="Output from stdout"/>
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43 </outputs>
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44 <help>**What it does**
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45
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46 Evaluation tool for isotope-labeled quantitation experiments.
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47
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48
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49 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help>
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50 <expand macro="references"/>
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51 </tool>
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