Mercurial > repos > galaxyp > mz_to_sqlite

comparison mz_to_sqlite.xml @ 2:8df9fe030d68 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit 2c0016faa867da59ca020587f3b704e70e16c7ca-dirty
author galaxyp
date Fri, 17 Jun 2016 15:03:22 -0400
parents 77389cf7ff62
children c8bdcf574413
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1:77389cf7ff62 2:8df9fe030d68
1 <tool id="mz_to_sqlite" name="mz to sqlite" version="1.0.0"> 1 <tool id="mz_to_sqlite" name="mz to sqlite" version="1.2.0">
2 <description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description> 2 <description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0.0">mztosqlite</requirement> 4 <requirement type="package" version="1.2.0">mztosqlite</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range="1:" level="fatal" description="Error Running mz_to_sqlite" /> 7 <exit_code range="1:" level="fatal" description="Error Running mz_to_sqlite" />
8 </stdio> 8 </stdio>
9 <command> 9 <command>
21 ]]> 21 ]]>
22 </command> 22 </command>
23 <inputs> 23 <inputs>
24 <param name="mzinputs" type="data" format="mzid" multiple="true" optional="true" label="Proteomics Identification files"/> 24 <param name="mzinputs" type="data" format="mzid" multiple="true" optional="true" label="Proteomics Identification files"/>
25 <param name="scanfiles" type="data" format="mzml,mgf" multiple="true" optional="true" label="Proteomics Spectrum files"/> 25 <param name="scanfiles" type="data" format="mzml,mgf" multiple="true" optional="true" label="Proteomics Spectrum files"/>
26 <param name="searchdbs" type="data" format="fasta" multiple="true" optional="true" label="Proteomics Search Database Fasta" 26 <param name="searchdbs" type="data" format="fasta,uniprotxml" multiple="true" optional="true" label="Proteomics Search Database Fasta"
27 help="These can provide sequences and length for proteins if not already present in the mzIdentML input"/> 27 help="These can provide sequences and length for proteins if not already present in the mzIdentML input"/>
28 </inputs> 28 </inputs>
29 <outputs> 29 <outputs>
30 <data format="mz.sqlite" name="mzsqlite" label="${tool.name} on ${on_string}"/> 30 <data format="mz.sqlite" name="mzsqlite" label="${tool.name} on ${on_string}"/>
31 </outputs> 31 </outputs>