Mercurial > repos > galaxyp > mz_to_sqlite

annotate test-data/test_id.mzid @ 6:f52c286f7e0b draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit 24561502a9bed97f351af6a0438aa82414a351ab"
author galaxyp
date Sat, 30 Oct 2021 13:05:57 +0000
parents c8bdcf574413
children
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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1 <?xml version="1.0" encoding="UTF-8"?>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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2 <MzIdentML id="PeptideShaker v1.16.9" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" version="1.1.0" creationDate="2018-01-19T02:00:07">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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3 <cvList>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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4 <cv id="PSI-MS" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" fullName="PSI-MS"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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5 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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6 <cv id="UO" uri="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" fullName="UNIT-ONTOLOGY"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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7 <cv id="PRIDE" uri="https://github.com/PRIDE-Utilities/pride-ontology/blob/master/pride_cv.obo" fullName="PRIDE"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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8 </cvList>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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9 <AnalysisSoftwareList>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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10 <AnalysisSoftware name="PeptideShaker" version="1.16.9" id="ID_software" uri="http://compomics.github.io/projects/peptide-shaker.html">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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11 <ContactRole contact_ref="PS_DEV">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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12 <Role>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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13 <cvParam cvRef="PSI-MS" accession="MS:1001267" name="software vendor"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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14 </Role>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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15 </ContactRole>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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16 <SoftwareName>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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17 <cvParam cvRef="PSI-MS" accession="MS:1002458" name="PeptideShaker"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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18 </SoftwareName>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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19 <Customizations>No customisations</Customizations>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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20 </AnalysisSoftware>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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21 </AnalysisSoftwareList>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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22 <Provider id="PROVIDER">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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23 <ContactRole contact_ref="PROVIDER">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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24 <Role>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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25 <cvParam cvRef="PSI-MS" accession="MS:1001271" name="researcher"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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26 </Role>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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27 </ContactRole>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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28 </Provider>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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29 <AuditCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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30 <Person firstName="Proteomics" lastName="Galaxy" id="PROVIDER">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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31 <cvParam cvRef="PSI-MS" accession="MS:1000587" name="contact address" value="galaxyp@umn.edu"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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32 <cvParam cvRef="PSI-MS" accession="MS:1000589" name="contact email" value="galaxyp@umn.edu"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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33 <Affiliation organization_ref="ORG_DOC_OWNER"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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34 </Person>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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35 <Organization name="University of Minnesota" id="ORG_DOC_OWNER">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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36 <cvParam cvRef="PSI-MS" accession="MS:1000586" name="contact name" value="University of Minnesota"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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37 <cvParam cvRef="PSI-MS" accession="MS:1000587" name="contact address" value="Minneapolis, MN 55455, Vereinigte Staaten"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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38 <cvParam cvRef="PSI-MS" accession="MS:1000589" name="contact email" value="galaxyp@umn.edu"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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39 </Organization>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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40 <Organization name="PeptideShaker developers" id="PS_DEV">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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41 <cvParam cvRef="PSI-MS" accession="MS:1000586" name="contact name" value="PeptideShaker developers"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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42 <cvParam cvRef="PSI-MS" accession="MS:1000587" name="contact address" value="Proteomics Unit, Building for Basic Biology, University of Bergen, Jonas Liesvei 91, N-5009 Bergen, Norway"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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43 <cvParam cvRef="PSI-MS" accession="MS:1000588" name="contact URL" value="http://compomics.github.io/projects/peptide-shaker.html"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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44 <cvParam cvRef="PSI-MS" accession="MS:1000589" name="contact email" value="peptide-shaker@googlegroups.com"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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45 </Organization>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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46 </AuditCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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47 <SequenceCollection></SequenceCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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48 <AnalysisCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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49 <SpectrumIdentification spectrumIdentificationList_ref="SIL_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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50 <InputSpectra spectraData_ref="Mascot formatted MGF of data 13.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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51 <InputSpectra spectraData_ref="Mascot formatted MGF of data 8.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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52 <InputSpectra spectraData_ref="Mascot formatted MGF of data 7.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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53 <InputSpectra spectraData_ref="Mascot formatted MGF of data 6.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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54 <InputSpectra spectraData_ref="Mascot formatted MGF of data 12.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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55 <InputSpectra spectraData_ref="Mascot formatted MGF of data 14.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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56 <InputSpectra spectraData_ref="Mascot formatted MGF of data 11.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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57 <InputSpectra spectraData_ref="Mascot formatted MGF of data 10.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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58 <InputSpectra spectraData_ref="Mascot formatted MGF of data 9.mgf"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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59 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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60 </SpectrumIdentification>
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61 <ProteinDetection proteinDetectionProtocol_ref="PeptideShaker_1" proteinDetectionList_ref="Protein_groups" id="PD_1">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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62 <InputSpectrumIdentifications spectrumIdentificationList_ref="SIL_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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63 </ProteinDetection>
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64 </AnalysisCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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65 <AnalysisProtocolCollection>
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66 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
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67 <SearchType>
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68 <cvParam cvRef="PSI-MS" accession="MS:1001083" name="ms-ms search"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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69 </SearchType>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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70 <AdditionalSearchParams>
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71 <cvParam cvRef="PSI-MS" accession="MS:1001211" name="parent mass type mono"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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72 <cvParam cvRef="PSI-MS" accession="MS:1001256" name="fragment mass type mono"/>
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73 </AdditionalSearchParams>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
74 <ModificationParams>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
75 <SearchModification residues="C" massDelta="57.021464" fixedMod= "true" >
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
76 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
77 </SearchModification>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
78 <SearchModification residues="K" massDelta="144.102062" fixedMod= "true" >
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
79 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
80 </SearchModification>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
81 <SearchModification residues="." massDelta="144.102062" fixedMod= "true" >
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
82 <SpecificityRules>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
83 <cvParam cvRef="PSI-MS" accession="MS:1001189" name="modification specificity peptide N-term"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
84 </SpecificityRules>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
85 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
86 </SearchModification>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
87 <SearchModification residues="M" massDelta="15.994915" fixedMod= "false" >
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
88 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
89 </SearchModification>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
90 <SearchModification residues="Y" massDelta="144.102062" fixedMod= "false" >
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
91 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
92 </SearchModification>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
93 </ModificationParams>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
94 <Enzymes independent="false">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
95 <Enzyme missedCleavages="2" semiSpecific="false" id="Enz1" name="Trypsin">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
96 <EnzymeName>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
97 <cvParam cvRef="PSI-MS" accession="MS:1001251" name="Trypsin"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
98 </EnzymeName>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
99 </Enzyme>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
100 </Enzymes>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
101 <FragmentTolerance>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
102 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221" value="0.05" name="search tolerance plus value" />
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
103 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221" value="0.05" name="search tolerance minus value" />
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
104 </FragmentTolerance>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
105 <ParentTolerance>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
106 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value" />
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
107 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value" />
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
108 </ParentTolerance>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
109 <Threshold>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
110 <cvParam cvRef="PSI-MS" accession="MS:1001364" name="peptide sequence-level global FDR" value="1.0"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
111 <cvParam cvRef="PSI-MS" accession="MS:1002350" name="PSM-level global FDR" value="1.0"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
112 <cvParam cvRef="PSI-MS" accession="MS:1002567" name="phosphoRS score threshold" value="95.0"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
113 <cvParam cvRef="PSI-MS" accession="MS:1002557" name="D-Score threshold" value="95.0"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
114 </Threshold>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
115 </SpectrumIdentificationProtocol>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
116 <ProteinDetectionProtocol analysisSoftware_ref="ID_software" id="PeptideShaker_1">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
117 <Threshold>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
118 <cvParam cvRef="PSI-MS" accession="MS:1002369" name="protein group-level global FDR" value="0.01"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
119 </Threshold>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
120 </ProteinDetectionProtocol>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
121 </AnalysisProtocolCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
122 <DataCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
123 <Inputs>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
124 <SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2010.t.xml" id="SourceFile_1">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
125 <FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
126 <cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
127 </FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
128 </SourceFile>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
129 <SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2011.t.xml" id="SourceFile_2">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
130 <FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
131 <cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
132 </FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
133 </SourceFile>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
134 <SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2012.t.xml" id="SourceFile_3">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
135 <FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
136 <cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
137 </FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
138 </SourceFile>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
139 <SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2013.t.xml" id="SourceFile_4">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
140 <FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
141 <cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
142 </FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
143 </SourceFile>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
144 <SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2014.t.xml" id="SourceFile_5">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
145 <FileFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
146 <cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
parents:
diff changeset
147 </FileFormat>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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diff changeset
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galaxyp
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177 </SearchDatabase>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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diff changeset
184 </SpectrumIDFormat>
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galaxyp
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diff changeset
185 </SpectraData>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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diff changeset
192 </SpectrumIDFormat>
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galaxyp
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diff changeset
193 </SpectraData>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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diff changeset
200 </SpectrumIDFormat>
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galaxyp
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diff changeset
201 </SpectraData>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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207 <cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
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galaxyp
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diff changeset
208 </SpectrumIDFormat>
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galaxyp
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diff changeset
209 </SpectraData>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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diff changeset
217 </SpectraData>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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224 </SpectrumIDFormat>
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galaxyp
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225 </SpectraData>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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232 </SpectrumIDFormat>
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galaxyp
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233 </SpectraData>
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galaxyp
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234 <SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%2010.mgf" id="Mascot formatted MGF of data 10.mgf" name="Mascot formatted MGF of data 10.mgf">
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galaxyp
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galaxyp
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237 </FileFormat>
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galaxyp
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238 <SpectrumIDFormat>
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galaxyp
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galaxyp
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diff changeset
240 </SpectrumIDFormat>
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galaxyp
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diff changeset
241 </SpectraData>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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246 <SpectrumIDFormat>
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galaxyp
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247 <cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
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galaxyp
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diff changeset
248 </SpectrumIDFormat>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
249 </SpectraData>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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galaxyp
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251 <AnalysisData>
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galaxyp
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diff changeset
252 <SpectrumIdentificationList id="SIL_1">
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galaxyp
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253 <FragmentationTable>
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galaxyp
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254 <Measure id="Measure_MZ">
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galaxyp
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255 <cvParam cvRef="PSI-MS" accession="MS:1001225" name="product ion m/z" unitCvRef="PSI-MS" unitAccession="MS:1000040" unitName="m/z" />
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galaxyp
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galaxyp
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257 <Measure id="Measure_Int">
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galaxyp
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galaxyp
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galaxyp
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260 <Measure id="Measure_Error">
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galaxyp
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galaxyp
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262 </Measure>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
263 </FragmentationTable>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
264 <SpectrumIdentificationResult spectraData_ref="Mascot formatted MGF of data 13.mgf" spectrumID="index=8003" id="SIR_1">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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265 <SpectrumIdentificationItem passThreshold="false" rank="1" peptide_ref="YPDSVCTVPSPPK_144.10206242080005-ATAA-1" calculatedMassToCharge="627.004694306842" experimentalMassToCharge="627.01001" chargeState="3" id="SII_1_1">
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galaxyp
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diff changeset
266 <PeptideEvidenceRef peptideEvidence_ref="PepEv_30384"/>
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galaxyp
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267 <Fragmentation>
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galaxyp
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268 <IonType charge="1" index="1">
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galaxyp
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diff changeset
269 <FragmentArray measure_ref="Measure_MZ" values="136.075226"/>
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galaxyp
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270 <FragmentArray measure_ref="Measure_Int" values="766.121643"/>
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galaxyp
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271 <FragmentArray measure_ref="Measure_Error" values="-4.643798020254053E-4"/>
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galaxyp
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galaxyp
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273 </IonType>
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galaxyp
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274 <IonType charge="1" index="0">
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galaxyp
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diff changeset
275 <FragmentArray measure_ref="Measure_MZ" values="114.110435"/>
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galaxyp
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276 <FragmentArray measure_ref="Measure_Int" values="26313.552734"/>
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galaxyp
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diff changeset
277 <FragmentArray measure_ref="Measure_Error" values="-2.4469905203261533E-4"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
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galaxyp
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diff changeset
279 </IonType>
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galaxyp
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280 <IonType charge="1" index="0">
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galaxyp
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diff changeset
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galaxyp
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galaxyp
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283 <FragmentArray measure_ref="Measure_Error" values="-2.3959245203286628E-4"/>
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galaxyp
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galaxyp
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galaxyp
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286 <IonType charge="1" index="1">
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galaxyp
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287 <FragmentArray measure_ref="Measure_MZ" values="452.243103"/>
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galaxyp
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galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
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galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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galaxyp
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diff changeset
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galaxyp
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galaxyp
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diff changeset
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galaxyp
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galaxyp
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galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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galaxyp
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galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
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galaxyp
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galaxyp
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diff changeset
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galaxyp
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galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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galaxyp
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diff changeset
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galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
322 </SpectrumIdentificationItem>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
325 </SpectrumIdentificationResult>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
326
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
328
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
329 </SpectrumIdentificationList>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
330 <ProteinDetectionList id="Protein_groups">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
331 <ProteinAmbiguityGroup id="PAG_0">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
332 <ProteinDetectionHypothesis id="PAG_0_1" dBSequence_ref="P27048" passThreshold="true">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
333 <PeptideHypothesis peptideEvidence_ref="PepEv_5247">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
334 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_27936_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
335 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_35350_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
336 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
337 <PeptideHypothesis peptideEvidence_ref="PepEv_11948">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
338 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28486_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
339 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_32857_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
340 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
341 <PeptideHypothesis peptideEvidence_ref="PepEv_38645">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
342 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28823_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
343 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
344 <PeptideHypothesis peptideEvidence_ref="PepEv_64667">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
345 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_40692_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
346 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_46888_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
348 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_59118_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
349 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_62451_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
350 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
351 <PeptideHypothesis peptideEvidence_ref="PepEv_68343">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
352 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_41960_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
353 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
354 <cvParam cvRef="PSI-MS" accession="MS:1002403" name="group representative"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
355 <cvParam cvRef="PSI-MS" accession="MS:1002401" name="leading protein"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
357 </ProteinDetectionHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
358 <ProteinDetectionHypothesis id="PAG_0_2" dBSequence_ref="P63163" passThreshold="true">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
359 <PeptideHypothesis peptideEvidence_ref="PepEv_5248">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
362 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
363 <PeptideHypothesis peptideEvidence_ref="PepEv_11949">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
364 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28486_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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diff changeset
365 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_32857_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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366 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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367 <PeptideHypothesis peptideEvidence_ref="PepEv_38646">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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368 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28823_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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369 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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370 <PeptideHypothesis peptideEvidence_ref="PepEv_64668">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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371 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_40692_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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372 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_46888_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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373 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_49545_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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374 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_59118_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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375 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_62451_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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376 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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377 <PeptideHypothesis peptideEvidence_ref="PepEv_68344">
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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378 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_41960_1"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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379 </PeptideHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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380 <cvParam cvRef="PSI-MS" accession="MS:1002401" name="leading protein"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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381 </ProteinDetectionHypothesis>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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382 <cvParam cvRef="PSI-MS" accession="MS:1002470" name="PeptideShaker protein group score" value="62.4192"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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383 <cvParam cvRef="PSI-MS" accession="MS:1002471" name="PeptideShaker protein group confidence" value="99.9665"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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384 <cvParam cvRef="PSI-MS" accession="MS:1002542" name="PeptideShaker protein confidence type" value="Confident"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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385 <cvParam cvRef="PSI-MS" accession="MS:1002415" name="protein group passes threshold" value="true"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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386 </ProteinAmbiguityGroup>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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387
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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388 <cvParam cvRef="PSI-MS" accession="MS:1002404" name="count of identified proteins" value="3290"/>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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389 </ProteinDetectionList>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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390 </AnalysisData>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
galaxyp
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391 </DataCollection>
c8bdcf574413 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
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392 </MzIdentML>