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comparison msgfplus.xml @ 4:159aa8cd779d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit bdb474693831a3375db79755e88641ad32b3b4e6-dirty
author galaxyp
date Sun, 21 Feb 2016 11:27:22 -0500
parents 08b316ae9ec4
children 468e8d70a073
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3:d279701267ce 4:159aa8cd779d
1 <tool id="msgfplus" name="MS-GF+" version="0.1"> 1 <tool id="msgfplus" name="MS-GF+" version="0.1">
2 <description> 2 <description>
3 Identifies peptides in tandem mass spectra using the MS-GF+ search engine. 3 Identifies peptides in tandem mass spectra using the MS-GF+ search engine.
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="10089">msgfplus</requirement> 6 <requirement type="package" version="v10089">msgfplus</requirement>
7 <environment_variable name="LC_ALL" action="set_to">C</environment_variable> 7 <environment_variable name="LC_ALL" action="set_to">C</environment_variable>
8 </requirements> 8 </requirements>
9 <stdio> 9 <stdio>
10 <exit_code range="1:" level="fatal" description="Job Failed" /> 10 <exit_code range="1:" level="fatal" description="Job Failed" />
11 <regex match="java.*Exception" level="fatal" description="Java Exception"/> 11 <regex match="java.*Exception" level="fatal" description="Java Exception"/>
12 <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/> 12 <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/>