Mercurial > repos > galaxyp > msgfplus

annotate test-data/201208-378803-msgf.mzid @ 0:dbc77b37e20f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
author galaxyp
date Fri, 06 Nov 2015 14:31:57 -0500
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0
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
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1 <?xml version="1.0" encoding="UTF-8"?>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
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2 <MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2015-11-06T18:22:31" >
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
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3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
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4 <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
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5 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
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6 <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/>
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7 </cvList>
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8 <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
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9 <AnalysisSoftware version="Beta (v10089)" name="MS-GF+" id="ID_software">
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10 <SoftwareName>
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11 <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/>
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12 </SoftwareName>
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13 </AnalysisSoftware>
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14 </AnalysisSoftwareList>
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15 <SequenceCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
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16 <DBSequence accession="XXX_gi|528968104|ref|XP_005212567.1|" searchDatabase_ref="SearchDB_1" length="815" id="DBSeq83632"/>
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17 <DBSequence accession="XXX_gi|528968106|ref|XP_005212568.1|" searchDatabase_ref="SearchDB_1" length="811" id="DBSeq84448"/>
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18 <DBSequence accession="XXX_gi|528968108|ref|XP_005212569.1|" searchDatabase_ref="SearchDB_1" length="766" id="DBSeq85260"/>
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19 <DBSequence accession="XXX_gi|115497338|ref|NP_001069884.1|" searchDatabase_ref="SearchDB_1" length="626" id="DBSeq93486"/>
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20 <DBSequence accession="gi|30466252|ref|NP_848667.1|" searchDatabase_ref="SearchDB_1" length="260" id="DBSeq46845">
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21 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|30466252|ref|NP_848667.1| carbonic anhydrase 2 [Bos taurus]" name="protein description"/>
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22 </DBSequence>
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23 <DBSequence accession="gi|30794280|ref|NP_851335.1|" searchDatabase_ref="SearchDB_1" length="607" id="DBSeq43937">
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24 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|30794280|ref|NP_851335.1| serum albumin precursor [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
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25 </DBSequence>
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26 <DBSequence accession="XXX_gi|528908802|ref|XP_005199340.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq56223"/>
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27 <DBSequence accession="XXX_gi|528908804|ref|XP_005199341.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq56840"/>
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28 <DBSequence accession="XXX_gi|528908806|ref|XP_005199342.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq57457"/>
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29 <DBSequence accession="XXX_gi|528908808|ref|XP_005199343.1|" searchDatabase_ref="SearchDB_1" length="615" id="DBSeq58074"/>
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30 <DBSequence accession="XXX_gi|528908810|ref|XP_005199344.1|" searchDatabase_ref="SearchDB_1" length="596" id="DBSeq58690"/>
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31 <DBSequence accession="XXX_gi|528908812|ref|XP_609847.5|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq59287"/>
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32 <DBSequence accession="XXX_gi|528959647|ref|XP_005210511.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq79979"/>
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33 <DBSequence accession="XXX_gi|528959649|ref|XP_005210512.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq80596"/>
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34 <DBSequence accession="XXX_gi|528959651|ref|XP_005210513.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq81213"/>
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35 <DBSequence accession="XXX_gi|528959653|ref|XP_005210514.1|" searchDatabase_ref="SearchDB_1" length="615" id="DBSeq81830"/>
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36 <DBSequence accession="XXX_gi|528959655|ref|XP_005210515.1|" searchDatabase_ref="SearchDB_1" length="596" id="DBSeq82446"/>
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37 <DBSequence accession="XXX_gi|528959657|ref|XP_002689899.2|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq83043"/>
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38 <DBSequence accession="XXX_gi|528928354|ref|XP_005193233.1|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq64736"/>
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39 <DBSequence accession="gi|528944676|ref|XP_005204734.1|" searchDatabase_ref="SearchDB_1" length="7610" id="DBSeq9505">
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40 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528944676|ref|XP_005204734.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X1 [Bos taurus]" name="protein description"/>
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41 </DBSequence>
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42 <DBSequence accession="gi|528944678|ref|XP_005204735.1|" searchDatabase_ref="SearchDB_1" length="5498" id="DBSeq17116">
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43 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528944678|ref|XP_005204735.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X2 [Bos taurus]" name="protein description"/>
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44 </DBSequence>
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45 <DBSequence accession="gi|219804516|ref|NP_001137332.1|" searchDatabase_ref="SearchDB_1" length="5422" id="DBSeq38514">
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46 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|219804516|ref|NP_001137332.1| microtubule-actin cross-linking factor 1 [Bos taurus]" name="protein description"/>
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47 </DBSequence>
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48 <DBSequence accession="XXX_gi|27806505|ref|NP_776558.1|" searchDatabase_ref="SearchDB_1" length="305" id="DBSeq100520"/>
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49 <DBSequence accession="XXX_gi|528944676|ref|XP_005204734.1|" searchDatabase_ref="SearchDB_1" length="7610" id="DBSeq65480"/>
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50 <DBSequence accession="XXX_gi|528944678|ref|XP_005204735.1|" searchDatabase_ref="SearchDB_1" length="5498" id="DBSeq73091"/>
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51 <DBSequence accession="XXX_gi|219804516|ref|NP_001137332.1|" searchDatabase_ref="SearchDB_1" length="5422" id="DBSeq94489"/>
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52 <DBSequence accession="gi|528993971|ref|XP_005219929.1|" searchDatabase_ref="SearchDB_1" length="768" id="DBSeq31093">
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53 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528993971|ref|XP_005219929.1| PREDICTED: lactoperoxidase isoform X1 [Bos taurus]" name="protein description"/>
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54 </DBSequence>
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55 <DBSequence accession="gi|528993973|ref|XP_005219930.1|" searchDatabase_ref="SearchDB_1" length="712" id="DBSeq31862">
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56 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528993973|ref|XP_005219930.1| PREDICTED: lactoperoxidase isoform X2 [Bos taurus]" name="protein description"/>
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57 </DBSequence>
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58 <DBSequence accession="gi|27806851|ref|NP_776358.1|" searchDatabase_ref="SearchDB_1" length="712" id="DBSeq47665">
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59 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|27806851|ref|NP_776358.1| lactoperoxidase precursor [Bos taurus]" name="protein description"/>
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60 </DBSequence>
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61 <DBSequence accession="gi|528961840|ref|XP_005211303.1|" searchDatabase_ref="SearchDB_1" length="719" id="DBSeq49855">
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62 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528961840|ref|XP_005211303.1| PREDICTED: protein KHNYN isoform X1 [Bos taurus]" name="protein description"/>
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63 </DBSequence>
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64 <DBSequence accession="gi|528961845|ref|XP_005211304.1|" searchDatabase_ref="SearchDB_1" length="676" id="DBSeq50575">
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diff changeset
65 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528961845|ref|XP_005211304.1| PREDICTED: protein KHNYN isoform X2 [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
66 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
67 <DBSequence accession="gi|156523214|ref|NP_001096021.1|" searchDatabase_ref="SearchDB_1" length="676" id="DBSeq54922">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
68 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|156523214|ref|NP_001096021.1| protein KHNYN [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
69 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
70 <DBSequence accession="gi|528921178|ref|XP_592304.7|" searchDatabase_ref="SearchDB_1" length="1252" id="DBSeq4600">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
71 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528921178|ref|XP_592304.7| PREDICTED: protein flightless-1 homolog isoformX1 [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
72 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
73 <DBSequence accession="gi|528921180|ref|XP_005195747.1|" searchDatabase_ref="SearchDB_1" length="1197" id="DBSeq5853">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
74 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528921180|ref|XP_005195747.1| PREDICTED: protein flightless-1 homolog isoform X2 [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
75 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
76 <DBSequence accession="gi|528995523|ref|XP_002695913.2|" searchDatabase_ref="SearchDB_1" length="1299" id="DBSeq33873">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
77 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528995523|ref|XP_002695913.2| PREDICTED: protein flightless-1 homolog [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
78 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
79 <DBSequence accession="XXX_gi|358414198|ref|XP_002700672.2|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq104353"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
80 <DBSequence accession="XXX_gi|528966552|ref|XP_005211956.1|" searchDatabase_ref="SearchDB_1" length="1131" id="DBSeq107227"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
81 <DBSequence accession="XXX_gi|528966554|ref|XP_005211957.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq108359"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
82 <DBSequence accession="XXX_gi|297479727|ref|XP_002690982.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq109459"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
83 <DBSequence accession="XXX_gi|528920173|ref|XP_001788336.2|" searchDatabase_ref="SearchDB_1" length="620" id="DBSeq59954"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
84 <DBSequence accession="XXX_gi|297486082|ref|XP_002695413.1|" searchDatabase_ref="SearchDB_1" length="626" id="DBSeq86441"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
85 <DBSequence accession="gi|358414198|ref|XP_002700672.2|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq48378">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
86 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|358414198|ref|XP_002700672.2| PREDICTED: LOW QUALITY PROTEIN: solute carrier family 12 member 1 [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
87 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
88 <DBSequence accession="gi|528966552|ref|XP_005211956.1|" searchDatabase_ref="SearchDB_1" length="1131" id="DBSeq51252">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
89 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528966552|ref|XP_005211956.1| PREDICTED: solute carrier family 12 member 1 isoform X2 [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
90 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
91 <DBSequence accession="gi|528966554|ref|XP_005211957.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq52384">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
92 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528966554|ref|XP_005211957.1| PREDICTED: solute carrier family 12 member 1 isoform X3 [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
93 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
94 <DBSequence accession="gi|297479727|ref|XP_002690982.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq53484">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
95 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|297479727|ref|XP_002690982.1| PREDICTED: solute carrier family 12 member 1 isoform X1 [Bos taurus]" name="protein description"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
96 </DBSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
97 <DBSequence accession="XXX_gi|528921178|ref|XP_592304.7|" searchDatabase_ref="SearchDB_1" length="1252" id="DBSeq60575"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
98 <DBSequence accession="XXX_gi|528921180|ref|XP_005195747.1|" searchDatabase_ref="SearchDB_1" length="1197" id="DBSeq61828"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
99 <DBSequence accession="XXX_gi|528995523|ref|XP_002695913.2|" searchDatabase_ref="SearchDB_1" length="1299" id="DBSeq89848"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
100 <DBSequence accession="XXX_gi|32880221|ref|NP_872593.1|" searchDatabase_ref="SearchDB_1" length="558" id="DBSeq103081"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
101 <DBSequence accession="XXX_gi|119924469|ref|XP_001252524.1|" searchDatabase_ref="SearchDB_1" length="376" id="DBSeq105453"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
102 <DBSequence accession="XXX_gi|28849951|ref|NP_788787.1|" searchDatabase_ref="SearchDB_1" length="376" id="DBSeq111574"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
103 <Peptide id="Pep1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
104 <PeptideSequence>ISELFDKLDSMSVDK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
105 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
106 <Peptide id="Pep2">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
107 <PeptideSequence>EPISVSSQQMLK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
108 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
109 <Peptide id="Pep3">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
110 <PeptideSequence>TVMENFVAFVDK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
111 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
112 <Peptide id="Pep4">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
113 <PeptideSequence>GCESCVYPK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
114 <Modification monoisotopicMassDelta="57.021463735" location="2">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
115 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
116 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
117 <Modification monoisotopicMassDelta="57.021463735" location="5">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
118 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
119 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
120 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
121 <Peptide id="Pep5">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
122 <PeptideSequence>RMMESRQR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
123 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
124 <Peptide id="Pep6">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
125 <PeptideSequence>VMDFFRRIDK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
126 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
127 <Peptide id="Pep7">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
128 <PeptideSequence>QINYDFLTR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
129 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
130 <Peptide id="Pep8">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
131 <PeptideSequence>DAENTVRGR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
132 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
133 <Peptide id="Pep9">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
134 <PeptideSequence>EEEELRRLADSIYK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
135 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
136 <Peptide id="Pep10">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
137 <PeptideSequence>NGQVWEESLKRLRR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
138 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
139 <Peptide id="Pep11">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
140 <PeptideSequence>GFGRGCERCSFPK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
141 <Modification monoisotopicMassDelta="57.021463735" location="6">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
142 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
143 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
144 <Modification monoisotopicMassDelta="57.021463735" location="9">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
145 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
146 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
147 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
148 <Peptide id="Pep12">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
149 <PeptideSequence>SLAMEWLEDIYAR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
150 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
151 <Peptide id="Pep13">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
152 <PeptideSequence>RISSYDDR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
153 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
154 <Peptide id="Pep14">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
155 <PeptideSequence>ACQVYIQHMR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
156 <Modification monoisotopicMassDelta="57.021463735" location="2">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
157 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
158 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
159 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
160 <Peptide id="Pep15">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
161 <PeptideSequence>TFAHTIDLLAPR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
162 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
163 <Peptide id="Pep16">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
164 <PeptideSequence>RGEACLDLLCESEER</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
165 <Modification monoisotopicMassDelta="57.021463735" location="5">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
166 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
167 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
168 <Modification monoisotopicMassDelta="57.021463735" location="10">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
169 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
170 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
171 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
172 <Peptide id="Pep17">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
173 <PeptideSequence>YRPDLVDMER</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
174 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
175 <Peptide id="Pep18">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
176 <PeptideSequence>YDQERLR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
177 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
178 <Peptide id="Pep19">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
179 <PeptideSequence>LEECEQR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
180 <Modification monoisotopicMassDelta="57.021463735" location="4">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
181 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
182 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
183 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
184 <Peptide id="Pep20">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
185 <PeptideSequence>KAMGSNMEK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
186 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
187 <Peptide id="Pep21">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
188 <PeptideSequence>AFYAAVAADCFRDGVR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
189 <Modification monoisotopicMassDelta="57.021463735" location="10">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
190 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
191 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
192 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
193 <Peptide id="Pep22">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
194 <PeptideSequence>TFAHQENGK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
195 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
196 <Peptide id="Pep23">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
197 <PeptideSequence>METESLQTKK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
198 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
199 <Peptide id="Pep24">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
200 <PeptideSequence>VNSGCMAMENK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
201 <Modification monoisotopicMassDelta="57.021463735" location="5">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
202 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
203 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
204 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
205 <Peptide id="Pep25">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
206 <PeptideSequence>KQEETERTK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
207 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
208 <Peptide id="Pep26">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
209 <PeptideSequence>EEEEYEVPVWYR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
210 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
211 <Peptide id="Pep27">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
212 <PeptideSequence>CFHAWSTFR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
213 <Modification monoisotopicMassDelta="57.021463735" location="1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
214 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
215 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
216 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
217 <Peptide id="Pep28">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
218 <PeptideSequence>DTEGFLEENQTK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
219 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
220 <Peptide id="Pep29">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
221 <PeptideSequence>EVESLMAKSR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
222 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
223 <Peptide id="Pep30">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
224 <PeptideSequence>GCEDCVCPK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
225 <Modification monoisotopicMassDelta="57.021463735" location="2">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
226 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
227 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
228 <Modification monoisotopicMassDelta="57.021463735" location="5">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
229 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
230 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
231 <Modification monoisotopicMassDelta="57.021463735" location="7">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
232 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
233 </Modification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
234 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
235 <Peptide id="Pep31">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
236 <PeptideSequence>ATEEQLK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
237 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
238 <Peptide id="Pep32">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
239 <PeptideSequence>KLVQVTGTRKGLEK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
240 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
241 <Peptide id="Pep33">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
242 <PeptideSequence>HDVGGFMVVSGEPK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
243 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
244 <Peptide id="Pep34">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
245 <PeptideSequence>QFSHPETK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
246 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
247 <Peptide id="Pep35">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
248 <PeptideSequence>DDSITEQNLK</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
249 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
250 <Peptide id="Pep36">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
251 <PeptideSequence>MSVADLDAR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
252 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
253 <Peptide id="Pep37">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
254 <PeptideSequence>TEPHSFQR</PeptideSequence>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
255 </Peptide>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
256 <PeptideEvidence isDecoy="true" post="I" pre="R" end="621" start="607" peptide_ref="Pep1" dBSequence_ref="DBSeq83632" id="PepEv_84238_1_607"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
257 <PeptideEvidence isDecoy="true" post="I" pre="R" end="617" start="603" peptide_ref="Pep1" dBSequence_ref="DBSeq84448" id="PepEv_85050_1_603"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
258 <PeptideEvidence isDecoy="true" post="I" pre="R" end="572" start="558" peptide_ref="Pep1" dBSequence_ref="DBSeq85260" id="PepEv_85817_1_558"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
259 <PeptideEvidence isDecoy="true" post="I" pre="R" end="432" start="418" peptide_ref="Pep1" dBSequence_ref="DBSeq93486" id="PepEv_93903_1_418"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
260 <PeptideEvidence isDecoy="false" post="F" pre="K" end="224" start="213" peptide_ref="Pep2" dBSequence_ref="DBSeq46845" id="PepEv_47057_2_213"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
261 <PeptideEvidence isDecoy="false" post="C" pre="K" end="580" start="569" peptide_ref="Pep3" dBSequence_ref="DBSeq43937" id="PepEv_44505_3_569"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
262 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq56223" id="PepEv_56363_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
263 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq56840" id="PepEv_56980_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
264 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq57457" id="PepEv_57597_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
265 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq58074" id="PepEv_58214_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
266 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq58690" id="PepEv_58830_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
267 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq59287" id="PepEv_59427_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
268 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq79979" id="PepEv_80119_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
269 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq80596" id="PepEv_80736_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
270 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq81213" id="PepEv_81353_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
271 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq81830" id="PepEv_81970_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
272 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq82446" id="PepEv_82586_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
273 <PeptideEvidence isDecoy="true" post="E" pre="R" end="149" start="141" peptide_ref="Pep4" dBSequence_ref="DBSeq83043" id="PepEv_83183_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
274 <PeptideEvidence isDecoy="true" post="S" pre="K" end="40" start="33" peptide_ref="Pep5" dBSequence_ref="DBSeq64736" id="PepEv_64768_5_33"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
275 <PeptideEvidence isDecoy="false" post="D" pre="R" end="7211" start="7202" peptide_ref="Pep6" dBSequence_ref="DBSeq9505" id="PepEv_16706_6_7202"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
276 <PeptideEvidence isDecoy="false" post="D" pre="R" end="5165" start="5156" peptide_ref="Pep6" dBSequence_ref="DBSeq17116" id="PepEv_22271_6_5156"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
277 <PeptideEvidence isDecoy="false" post="D" pre="R" end="5089" start="5080" peptide_ref="Pep6" dBSequence_ref="DBSeq38514" id="PepEv_43593_6_5080"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
278 <PeptideEvidence isDecoy="true" post="G" pre="K" end="176" start="168" peptide_ref="Pep7" dBSequence_ref="DBSeq100520" id="PepEv_100687_7_168"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
279 <PeptideEvidence isDecoy="false" post="L" pre="R" end="2541" start="2533" peptide_ref="Pep8" dBSequence_ref="DBSeq9505" id="PepEv_12037_8_2533"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
280 <PeptideEvidence isDecoy="true" post="V" pre="K" end="6129" start="6116" peptide_ref="Pep9" dBSequence_ref="DBSeq65480" id="PepEv_71595_9_6116"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
281 <PeptideEvidence isDecoy="true" post="V" pre="K" end="4019" start="4006" peptide_ref="Pep9" dBSequence_ref="DBSeq73091" id="PepEv_77096_9_4006"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
282 <PeptideEvidence isDecoy="true" post="V" pre="K" end="4019" start="4006" peptide_ref="Pep9" dBSequence_ref="DBSeq94489" id="PepEv_98494_9_4006"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
283 <PeptideEvidence isDecoy="false" post="D" pre="R" end="156" start="143" peptide_ref="Pep10" dBSequence_ref="DBSeq31093" id="PepEv_31235_10_143"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
284 <PeptideEvidence isDecoy="false" post="D" pre="R" end="100" start="87" peptide_ref="Pep10" dBSequence_ref="DBSeq31862" id="PepEv_31948_10_87"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
285 <PeptideEvidence isDecoy="false" post="D" pre="R" end="100" start="87" peptide_ref="Pep10" dBSequence_ref="DBSeq47665" id="PepEv_47751_10_87"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
286 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq56223" id="PepEv_56555_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
287 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq56840" id="PepEv_57172_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
288 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq57457" id="PepEv_57789_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
289 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq58074" id="PepEv_58406_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
290 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq58690" id="PepEv_59022_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
291 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq59287" id="PepEv_59619_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
292 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq79979" id="PepEv_80311_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
293 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq80596" id="PepEv_80928_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
294 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq81213" id="PepEv_81545_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
295 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq81830" id="PepEv_82162_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
296 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq82446" id="PepEv_82778_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
297 <PeptideEvidence isDecoy="true" post="E" pre="R" end="345" start="333" peptide_ref="Pep11" dBSequence_ref="DBSeq83043" id="PepEv_83375_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
298 <PeptideEvidence isDecoy="true" post="N" pre="K" end="449" start="437" peptide_ref="Pep12" dBSequence_ref="DBSeq83632" id="PepEv_84068_12_437"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
299 <PeptideEvidence isDecoy="true" post="N" pre="K" end="445" start="433" peptide_ref="Pep12" dBSequence_ref="DBSeq84448" id="PepEv_84880_12_433"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
300 <PeptideEvidence isDecoy="true" post="N" pre="K" end="400" start="388" peptide_ref="Pep12" dBSequence_ref="DBSeq85260" id="PepEv_85647_12_388"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
301 <PeptideEvidence isDecoy="true" post="N" pre="K" end="260" start="248" peptide_ref="Pep12" dBSequence_ref="DBSeq93486" id="PepEv_93733_12_248"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
302 <PeptideEvidence isDecoy="false" post="F" pre="K" end="566" start="559" peptide_ref="Pep13" dBSequence_ref="DBSeq49855" id="PepEv_50413_13_559"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
303 <PeptideEvidence isDecoy="false" post="F" pre="K" end="523" start="516" peptide_ref="Pep13" dBSequence_ref="DBSeq50575" id="PepEv_51090_13_516"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
304 <PeptideEvidence isDecoy="false" post="F" pre="K" end="523" start="516" peptide_ref="Pep13" dBSequence_ref="DBSeq54922" id="PepEv_55437_13_516"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
305 <PeptideEvidence isDecoy="false" post="S" pre="K" end="1215" start="1206" peptide_ref="Pep14" dBSequence_ref="DBSeq4600" id="PepEv_5805_14_1206"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
306 <PeptideEvidence isDecoy="false" post="S" pre="K" end="1160" start="1151" peptide_ref="Pep14" dBSequence_ref="DBSeq5853" id="PepEv_7003_14_1151"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
307 <PeptideEvidence isDecoy="false" post="S" pre="K" end="1262" start="1253" peptide_ref="Pep14" dBSequence_ref="DBSeq33873" id="PepEv_35125_14_1253"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
308 <PeptideEvidence isDecoy="true" post="T" pre="K" end="406" start="395" peptide_ref="Pep15" dBSequence_ref="DBSeq104353" id="PepEv_104747_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
309 <PeptideEvidence isDecoy="true" post="T" pre="K" end="406" start="395" peptide_ref="Pep15" dBSequence_ref="DBSeq107227" id="PepEv_107621_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
310 <PeptideEvidence isDecoy="true" post="T" pre="K" end="406" start="395" peptide_ref="Pep15" dBSequence_ref="DBSeq108359" id="PepEv_108753_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
311 <PeptideEvidence isDecoy="true" post="T" pre="K" end="406" start="395" peptide_ref="Pep15" dBSequence_ref="DBSeq109459" id="PepEv_109853_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
312 <PeptideEvidence isDecoy="true" post="W" pre="K" end="527" start="513" peptide_ref="Pep16" dBSequence_ref="DBSeq58074" id="PepEv_58586_16_513"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
313 <PeptideEvidence isDecoy="true" post="W" pre="K" end="527" start="513" peptide_ref="Pep16" dBSequence_ref="DBSeq81830" id="PepEv_82342_16_513"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
314 <PeptideEvidence isDecoy="false" post="V" pre="R" end="321" start="312" peptide_ref="Pep17" dBSequence_ref="DBSeq9505" id="PepEv_9816_17_312"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
315 <PeptideEvidence isDecoy="false" post="V" pre="R" end="321" start="312" peptide_ref="Pep17" dBSequence_ref="DBSeq17116" id="PepEv_17427_17_312"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
316 <PeptideEvidence isDecoy="false" post="V" pre="R" end="245" start="236" peptide_ref="Pep17" dBSequence_ref="DBSeq38514" id="PepEv_38749_17_236"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
317 <PeptideEvidence isDecoy="true" post="W" pre="K" end="403" start="397" peptide_ref="Pep18" dBSequence_ref="DBSeq59954" id="PepEv_60350_18_397"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
318 <PeptideEvidence isDecoy="true" post="W" pre="K" end="409" start="403" peptide_ref="Pep18" dBSequence_ref="DBSeq86441" id="PepEv_86843_18_403"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
319 <PeptideEvidence isDecoy="false" post="L" pre="R" end="1144" start="1138" peptide_ref="Pep19" dBSequence_ref="DBSeq9505" id="PepEv_10642_19_1138"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
320 <PeptideEvidence isDecoy="false" post="L" pre="R" end="1142" start="1136" peptide_ref="Pep19" dBSequence_ref="DBSeq17116" id="PepEv_18251_19_1136"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
321 <PeptideEvidence isDecoy="false" post="L" pre="R" end="1066" start="1060" peptide_ref="Pep19" dBSequence_ref="DBSeq38514" id="PepEv_39573_19_1060"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
322 <PeptideEvidence isDecoy="true" post="V" pre="K" end="374" start="366" peptide_ref="Pep20" dBSequence_ref="DBSeq104353" id="PepEv_104718_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
323 <PeptideEvidence isDecoy="true" post="V" pre="K" end="374" start="366" peptide_ref="Pep20" dBSequence_ref="DBSeq107227" id="PepEv_107592_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
324 <PeptideEvidence isDecoy="true" post="V" pre="K" end="374" start="366" peptide_ref="Pep20" dBSequence_ref="DBSeq108359" id="PepEv_108724_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
325 <PeptideEvidence isDecoy="true" post="V" pre="K" end="374" start="366" peptide_ref="Pep20" dBSequence_ref="DBSeq109459" id="PepEv_109824_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
326 <PeptideEvidence isDecoy="false" post="S" pre="K" end="761" start="746" peptide_ref="Pep21" dBSequence_ref="DBSeq48378" id="PepEv_49123_21_746"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
327 <PeptideEvidence isDecoy="false" post="S" pre="K" end="793" start="778" peptide_ref="Pep21" dBSequence_ref="DBSeq51252" id="PepEv_52029_21_778"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
328 <PeptideEvidence isDecoy="false" post="S" pre="K" end="761" start="746" peptide_ref="Pep21" dBSequence_ref="DBSeq52384" id="PepEv_53129_21_746"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
329 <PeptideEvidence isDecoy="false" post="S" pre="K" end="761" start="746" peptide_ref="Pep21" dBSequence_ref="DBSeq53484" id="PepEv_54229_21_746"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
330 <PeptideEvidence isDecoy="true" post="R" pre="R" end="23" start="15" peptide_ref="Pep22" dBSequence_ref="DBSeq60575" id="PepEv_60589_22_15"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
331 <PeptideEvidence isDecoy="true" post="R" pre="R" end="23" start="15" peptide_ref="Pep22" dBSequence_ref="DBSeq61828" id="PepEv_61842_22_15"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
332 <PeptideEvidence isDecoy="true" post="R" pre="R" end="23" start="15" peptide_ref="Pep22" dBSequence_ref="DBSeq89848" id="PepEv_89862_22_15"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
333 <PeptideEvidence isDecoy="true" post="E" pre="R" end="140" start="131" peptide_ref="Pep23" dBSequence_ref="DBSeq64736" id="PepEv_64866_23_131"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
334 <PeptideEvidence isDecoy="false" post="L" pre="R" end="5165" start="5155" peptide_ref="Pep24" dBSequence_ref="DBSeq9505" id="PepEv_14659_24_5155"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
335 <PeptideEvidence isDecoy="false" post="L" pre="R" end="3123" start="3113" peptide_ref="Pep24" dBSequence_ref="DBSeq17116" id="PepEv_20228_24_3113"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
336 <PeptideEvidence isDecoy="false" post="L" pre="R" end="3047" start="3037" peptide_ref="Pep24" dBSequence_ref="DBSeq38514" id="PepEv_41550_24_3037"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
337 <PeptideEvidence isDecoy="true" post="L" pre="R" end="469" start="461" peptide_ref="Pep25" dBSequence_ref="DBSeq103081" id="PepEv_103541_25_461"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
338 <PeptideEvidence isDecoy="true" post="C" pre="K" end="330" start="319" peptide_ref="Pep26" dBSequence_ref="DBSeq60575" id="PepEv_60893_26_319"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
339 <PeptideEvidence isDecoy="true" post="C" pre="K" end="330" start="319" peptide_ref="Pep26" dBSequence_ref="DBSeq61828" id="PepEv_62146_26_319"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
340 <PeptideEvidence isDecoy="true" post="C" pre="K" end="330" start="319" peptide_ref="Pep26" dBSequence_ref="DBSeq89848" id="PepEv_90166_26_319"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
341 <PeptideEvidence isDecoy="false" post="Q" pre="R" end="1248" start="1240" peptide_ref="Pep27" dBSequence_ref="DBSeq4600" id="PepEv_5839_27_1240"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
342 <PeptideEvidence isDecoy="false" post="Q" pre="R" end="1193" start="1185" peptide_ref="Pep27" dBSequence_ref="DBSeq5853" id="PepEv_7037_27_1185"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
343 <PeptideEvidence isDecoy="false" post="Q" pre="R" end="1295" start="1287" peptide_ref="Pep27" dBSequence_ref="DBSeq33873" id="PepEv_35159_27_1287"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
344 <PeptideEvidence isDecoy="false" post="L" pre="K" end="3741" start="3730" peptide_ref="Pep28" dBSequence_ref="DBSeq9505" id="PepEv_13234_28_3730"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
345 <PeptideEvidence isDecoy="false" post="L" pre="K" end="1699" start="1688" peptide_ref="Pep28" dBSequence_ref="DBSeq17116" id="PepEv_18803_28_1688"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
346 <PeptideEvidence isDecoy="false" post="L" pre="K" end="1623" start="1612" peptide_ref="Pep28" dBSequence_ref="DBSeq38514" id="PepEv_40125_28_1612"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
347 <PeptideEvidence isDecoy="true" post="L" pre="K" end="2619" start="2610" peptide_ref="Pep29" dBSequence_ref="DBSeq65480" id="PepEv_68089_29_2610"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
348 <PeptideEvidence isDecoy="true" post="L" pre="K" end="2549" start="2540" peptide_ref="Pep29" dBSequence_ref="DBSeq73091" id="PepEv_75630_29_2540"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
349 <PeptideEvidence isDecoy="true" post="L" pre="K" end="2549" start="2540" peptide_ref="Pep29" dBSequence_ref="DBSeq94489" id="PepEv_97028_29_2540"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
350 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq56223" id="PepEv_56279_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
351 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq56840" id="PepEv_56896_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
352 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq57457" id="PepEv_57513_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
353 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq58074" id="PepEv_58130_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
354 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq58690" id="PepEv_58746_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
355 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq59287" id="PepEv_59343_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
356 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq79979" id="PepEv_80035_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
357 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq80596" id="PepEv_80652_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
358 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq81213" id="PepEv_81269_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
359 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq81830" id="PepEv_81886_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
360 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq82446" id="PepEv_82502_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
361 <PeptideEvidence isDecoy="true" post="E" pre="R" end="65" start="57" peptide_ref="Pep30" dBSequence_ref="DBSeq83043" id="PepEv_83099_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
362 <PeptideEvidence isDecoy="false" post="T" pre="K" end="568" start="562" peptide_ref="Pep31" dBSequence_ref="DBSeq43937" id="PepEv_44498_31_562"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
363 <PeptideEvidence isDecoy="true" post="Q" pre="R" end="750" start="737" peptide_ref="Pep32" dBSequence_ref="DBSeq65480" id="PepEv_66216_32_737"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
364 <PeptideEvidence isDecoy="true" post="Q" pre="R" end="680" start="667" peptide_ref="Pep32" dBSequence_ref="DBSeq73091" id="PepEv_73757_32_667"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
365 <PeptideEvidence isDecoy="true" post="Q" pre="R" end="680" start="667" peptide_ref="Pep32" dBSequence_ref="DBSeq94489" id="PepEv_95155_32_667"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
366 <PeptideEvidence isDecoy="true" post="Y" pre="R" end="166" start="153" peptide_ref="Pep33" dBSequence_ref="DBSeq105453" id="PepEv_105605_33_153"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
367 <PeptideEvidence isDecoy="true" post="N" pre="R" end="166" start="153" peptide_ref="Pep33" dBSequence_ref="DBSeq111574" id="PepEv_111726_33_153"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
368 <PeptideEvidence isDecoy="false" post="E" pre="R" end="2635" start="2628" peptide_ref="Pep34" dBSequence_ref="DBSeq9505" id="PepEv_12132_34_2628"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
369 <PeptideEvidence isDecoy="true" post="E" pre="R" end="4534" start="4525" peptide_ref="Pep35" dBSequence_ref="DBSeq65480" id="PepEv_70004_35_4525"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
370 <PeptideEvidence isDecoy="true" post="L" pre="K" end="6428" start="6420" peptide_ref="Pep36" dBSequence_ref="DBSeq65480" id="PepEv_71899_36_6420"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
371 <PeptideEvidence isDecoy="true" post="L" pre="K" end="4318" start="4310" peptide_ref="Pep36" dBSequence_ref="DBSeq73091" id="PepEv_77400_36_4310"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
372 <PeptideEvidence isDecoy="true" post="L" pre="K" end="4318" start="4310" peptide_ref="Pep36" dBSequence_ref="DBSeq94489" id="PepEv_98798_36_4310"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
373 <PeptideEvidence isDecoy="true" post="L" pre="K" end="4984" start="4977" peptide_ref="Pep37" dBSequence_ref="DBSeq65480" id="PepEv_70456_37_4977"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
374 </SequenceCollection>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
375 <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
376 <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
377 <InputSpectra spectraData_ref="SID_1"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
378 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
379 </SpectrumIdentification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
380 </AnalysisCollection>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
381 <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
382 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
383 <SearchType>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
384 <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
385 </SearchType>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
386 <AdditionalSearchParams>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
387 <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
388 <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
389 <userParam value="true" name="TargetDecoyApproach"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
390 <userParam value="0" name="MinIsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
391 <userParam value="1" name="MaxIsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
392 <userParam value="As written in the spectrum or CID if no info" name="FragmentMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
393 <userParam value="LowRes" name="Instrument"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
394 <userParam value="Automatic" name="Protocol"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
395 <userParam value="2" name="NumTolerableTermini"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
396 <userParam value="1" name="NumMatchesPerSpec"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
397 <userParam value="2" name="MaxNumModifications"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
398 <userParam value="6" name="MinPepLength"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
399 <userParam value="40" name="MaxPepLength"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
400 <userParam value="2" name="MinCharge"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
401 <userParam value="3" name="MaxCharge"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
402 </AdditionalSearchParams>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
403 <ModificationParams>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
404 <SearchModification residues="C" massDelta="57.021465" fixedMod="true">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
405 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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406 </SearchModification>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
407 </ModificationParams>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
408 <Enzymes>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
409 <Enzyme missedCleavages="1000" semiSpecific="false" id="Tryp">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
410 <EnzymeName>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
411 <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
412 </EnzymeName>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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413 </Enzyme>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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414 </Enzymes>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
415 <ParentTolerance>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
416 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
417 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
418 </ParentTolerance>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
419 <Threshold>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
420 <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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diff changeset
421 </Threshold>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
422 </SpectrumIdentificationProtocol>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
423 </AnalysisProtocolCollection>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
424 <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
425 <Inputs>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
426 <SearchDatabase numDatabaseSequences="144" location="/tmp/tmp4LerJZ/job_working_directory/000/3/cow.protein.PRG2012-subset.fasta" id="SearchDB_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
427 <FileFormat>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
428 <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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429 </FileFormat>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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430 <DatabaseName>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
431 <userParam name="cow.protein.PRG2012-subset.fasta"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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432 </DatabaseName>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
433 <cvParam accession="MS:1001197" cvRef="PSI-MS" name="DB composition target+decoy"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
434 <cvParam accession="MS:1001283" cvRef="PSI-MS" value="^XXX" name="decoy DB accession regexp"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
435 <cvParam accession="MS:1001195" cvRef="PSI-MS" name="decoy DB type reverse"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
436 </SearchDatabase>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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437 <SpectraData location="/tmp/tmp4LerJZ/job_working_directory/000/3/201208-378803.mzML" name="201208-378803.mzML" id="SID_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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438 <FileFormat>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
439 <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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440 </FileFormat>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
441 <SpectrumIDFormat>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
442 <cvParam accession="MS:1000770" cvRef="PSI-MS" name="WIFF nativeID format"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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443 </SpectrumIDFormat>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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444 </SpectraData>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
445 </Inputs>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
446 <AnalysisData>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
447 <SpectrumIdentificationList id="SI_LIST_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
448 <FragmentationTable>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
449 <Measure id="Measure_MZ">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
450 <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
451 </Measure>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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452 </FragmentationTable>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
453 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1224 experiment=2" id="SIR_86">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
454 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep1" calculatedMassToCharge="576.2904663085938" experimentalMassToCharge="576.2933349609375" chargeState="3" id="SII_86_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
455 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84238_1_607"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
456 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85050_1_603"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
457 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85817_1_558"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
458 <PeptideEvidenceRef peptideEvidence_ref="PepEv_93903_1_418"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
459 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="4" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
460 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
461 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.102318E-7" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
462 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.0044464204" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
463 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
464 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.5" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
465 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
466 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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diff changeset
467 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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468 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
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469 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1215 experiment=4" id="SIR_64">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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470 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep2" calculatedMassToCharge="673.8528442382812" experimentalMassToCharge="674.3531494140625" chargeState="2" id="SII_64_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
471 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47057_2_213"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
472 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-1" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
473 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="62" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
474 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.9320014E-6" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
475 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.07703469" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
476 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
477 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.5" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
478 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
479 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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480 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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481 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
482 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1207 experiment=3" id="SIR_36">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
483 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep3" calculatedMassToCharge="467.2357482910156" experimentalMassToCharge="467.236083984375" chargeState="3" id="SII_36_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
484 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44505_3_569"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
485 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-6" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
486 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="56" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
487 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.1584068E-6" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
488 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.12593515" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
489 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
490 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.5" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
491 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
492 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
493 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
494 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
495 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1225 experiment=2" id="SIR_87">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
496 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep4" calculatedMassToCharge="550.2310180664062" experimentalMassToCharge="550.7279052734375" chargeState="2" id="SII_87_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
497 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56363_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
498 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56980_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
499 <PeptideEvidenceRef peptideEvidence_ref="PepEv_57597_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
500 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58214_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
501 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58830_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
502 <PeptideEvidenceRef peptideEvidence_ref="PepEv_59427_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
503 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80119_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
504 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80736_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
505 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81353_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
506 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81970_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
507 <PeptideEvidenceRef peptideEvidence_ref="PepEv_82586_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
508 <PeptideEvidenceRef peptideEvidence_ref="PepEv_83183_4_141"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
509 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-20" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
510 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="46" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
511 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.9174837E-5" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
512 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.1478548" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
513 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
514 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
515 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
516 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
517 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
518 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
519 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1213 experiment=3" id="SIR_55">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
520 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep5" calculatedMassToCharge="547.2713012695312" experimentalMassToCharge="547.2749633789062" chargeState="2" id="SII_55_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
521 <PeptideEvidenceRef peptideEvidence_ref="PepEv_64768_5_33"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
522 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
523 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="42" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
524 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.1980456E-5" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
525 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.6431991" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
526 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
527 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
528 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
529 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
530 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
531 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
532 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1192 experiment=2" id="SIR_10">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
533 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep6" calculatedMassToCharge="442.9044494628906" experimentalMassToCharge="443.2386779785156" chargeState="3" id="SII_10_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
534 <PeptideEvidenceRef peptideEvidence_ref="PepEv_16706_6_7202"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
535 <PeptideEvidenceRef peptideEvidence_ref="PepEv_22271_6_5156"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
536 <PeptideEvidenceRef peptideEvidence_ref="PepEv_43593_6_5080"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
537 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
538 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="56" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
539 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.5939476E-5" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
540 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.2114553" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
541 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
542 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
543 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
544 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
545 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
546 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
547 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1428 experiment=2" id="SIR_105">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
548 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep7" calculatedMassToCharge="585.3011474609375" experimentalMassToCharge="585.301513671875" chargeState="2" id="SII_105_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
549 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100687_7_168"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
550 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-34" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
551 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="78" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
552 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.7509216E-5" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
553 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.4429624" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
554 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
555 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
556 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
557 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
558 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
559 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
560 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1219 experiment=3" id="SIR_78">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
561 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep8" calculatedMassToCharge="509.2572326660156" experimentalMassToCharge="509.2569580078125" chargeState="2" id="SII_78_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
562 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12037_8_2533"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
563 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-23" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
564 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="42" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
565 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.7621585E-5" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
566 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.4473836" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
567 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
568 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
569 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
570 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
571 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
572 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
573 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1212 experiment=5" id="SIR_53">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
574 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep9" calculatedMassToCharge="584.3038330078125" experimentalMassToCharge="584.6378784179688" chargeState="3" id="SII_53_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
575 <PeptideEvidenceRef peptideEvidence_ref="PepEv_71595_9_6116"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
576 <PeptideEvidenceRef peptideEvidence_ref="PepEv_77096_9_4006"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
577 <PeptideEvidenceRef peptideEvidence_ref="PepEv_98494_9_4006"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
578 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-17" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
579 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
580 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.1168391E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
581 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.488241" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
582 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
583 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
584 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
585 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
586 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
587 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
588 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1283 experiment=2" id="SIR_104">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
589 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep10" calculatedMassToCharge="590.99560546875" experimentalMassToCharge="591.3255615234375" chargeState="3" id="SII_104_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
590 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31235_10_143"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
591 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31948_10_87"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
592 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47751_10_87"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
593 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-18" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
594 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="87" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
595 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.11776455E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
596 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.4919605" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
597 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
598 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
599 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
600 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
601 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
602 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
603 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1203 experiment=3" id="SIR_30">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
604 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep11" calculatedMassToCharge="519.906494140625" experimentalMassToCharge="520.2384033203125" chargeState="3" id="SII_30_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
605 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56555_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
606 <PeptideEvidenceRef peptideEvidence_ref="PepEv_57172_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
607 <PeptideEvidenceRef peptideEvidence_ref="PepEv_57789_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
608 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58406_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
609 <PeptideEvidenceRef peptideEvidence_ref="PepEv_59022_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
610 <PeptideEvidenceRef peptideEvidence_ref="PepEv_59619_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
611 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80311_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
612 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80928_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
613 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81545_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
614 <PeptideEvidenceRef peptideEvidence_ref="PepEv_82162_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
615 <PeptideEvidenceRef peptideEvidence_ref="PepEv_82778_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
616 <PeptideEvidenceRef peptideEvidence_ref="PepEv_83375_11_333"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
617 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-9" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
618 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="68" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
619 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.12741174E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
620 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.5131416" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
621 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
622 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
623 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
624 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
625 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
626 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
627 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1210 experiment=4" id="SIR_45">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
628 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep5" calculatedMassToCharge="547.2713012695312" experimentalMassToCharge="547.7760620117188" chargeState="2" id="SII_45_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
629 <PeptideEvidenceRef peptideEvidence_ref="PepEv_64768_5_33"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
630 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-25" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
631 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="41" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
632 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.32885E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
633 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="5.201385" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
634 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
635 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
636 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
637 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
638 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
639 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
640 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1580 experiment=2" id="SIR_106">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
641 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep12" calculatedMassToCharge="532.9290771484375" experimentalMassToCharge="533.2622680664062" chargeState="3" id="SII_106_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
642 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84068_12_437"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
643 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84880_12_433"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
644 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85647_12_388"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
645 <PeptideEvidenceRef peptideEvidence_ref="PepEv_93733_12_248"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
646 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-36" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
647 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="37" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
648 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.5595248E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
649 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="6.2429338" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
650 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
651 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
652 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
653 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
654 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
655 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
656 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1181 experiment=2" id="SIR_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
657 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep13" calculatedMassToCharge="506.2463073730469" experimentalMassToCharge="506.7447204589844" chargeState="2" id="SII_1_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
658 <PeptideEvidenceRef peptideEvidence_ref="PepEv_50413_13_559"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
659 <PeptideEvidenceRef peptideEvidence_ref="PepEv_51090_13_516"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
660 <PeptideEvidenceRef peptideEvidence_ref="PepEv_55437_13_516"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
661 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-30" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
662 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="35" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
663 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.662773E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
664 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="6.5084257" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
665 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
666 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
667 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
668 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
669 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
670 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
671 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1212 experiment=2" id="SIR_50">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
672 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep14" calculatedMassToCharge="653.3131713867188" experimentalMassToCharge="653.3101806640625" chargeState="2" id="SII_50_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
673 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5805_14_1206"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
674 <PeptideEvidenceRef peptideEvidence_ref="PepEv_7003_14_1151"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
675 <PeptideEvidenceRef peptideEvidence_ref="PepEv_35125_14_1253"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
676 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-30" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
677 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="87" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
678 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.8975869E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
679 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="7.5017304" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
680 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
681 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
682 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
683 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
684 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
685 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
686 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1209 experiment=2" id="SIR_39">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
687 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep15" calculatedMassToCharge="452.2541198730469" experimentalMassToCharge="452.254638671875" chargeState="3" id="SII_39_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
688 <PeptideEvidenceRef peptideEvidence_ref="PepEv_104747_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
689 <PeptideEvidenceRef peptideEvidence_ref="PepEv_107621_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
690 <PeptideEvidenceRef peptideEvidence_ref="PepEv_108753_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
691 <PeptideEvidenceRef peptideEvidence_ref="PepEv_109853_15_395"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
692 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-23" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
693 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="54" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
694 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.3839003E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
695 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.505325" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
696 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
697 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
698 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
699 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
700 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
701 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
702 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1198 experiment=3" id="SIR_18">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
703 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep16" calculatedMassToCharge="612.9453125" experimentalMassToCharge="613.275634765625" chargeState="3" id="SII_18_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
704 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58586_16_513"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
705 <PeptideEvidenceRef peptideEvidence_ref="PepEv_82342_16_513"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
706 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-22" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
707 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="75" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
708 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.384542E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
709 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.618527" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
710 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
711 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
712 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
713 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
714 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
715 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
716 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1218 experiment=4" id="SIR_75">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
717 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep17" calculatedMassToCharge="647.3164672851562" experimentalMassToCharge="647.8163452148438" chargeState="2" id="SII_75_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
718 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9816_17_312"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
719 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17427_17_312"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
720 <PeptideEvidenceRef peptideEvidence_ref="PepEv_38749_17_236"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
721 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-32" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
722 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="49" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
723 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.609211E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
724 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="10.314994" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
725 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
726 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
727 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
728 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
729 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
730 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
731 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1231 experiment=2" id="SIR_96">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
732 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep18" calculatedMassToCharge="490.25140380859375" experimentalMassToCharge="490.2488098144531" chargeState="2" id="SII_96_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
733 <PeptideEvidenceRef peptideEvidence_ref="PepEv_60350_18_397"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
734 <PeptideEvidenceRef peptideEvidence_ref="PepEv_86843_18_403"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
735 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-23" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
736 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="74" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
737 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.6585863E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
738 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="10.34775" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
739 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
740 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
741 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
742 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
743 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
744 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
745 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1219 experiment=4" id="SIR_79">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
746 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep19" calculatedMassToCharge="482.213623046875" experimentalMassToCharge="482.21160888671875" chargeState="2" id="SII_79_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
747 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10642_19_1138"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
748 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18251_19_1136"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
749 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39573_19_1060"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
750 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-34" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
751 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="45" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
752 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.7291116E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
753 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="10.622249" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
754 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
755 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
756 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
757 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
758 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
759 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
760 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1211 experiment=5" id="SIR_49">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
761 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep20" calculatedMassToCharge="498.2360534667969" experimentalMassToCharge="498.2347412109375" chargeState="2" id="SII_49_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
762 <PeptideEvidenceRef peptideEvidence_ref="PepEv_104718_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
763 <PeptideEvidenceRef peptideEvidence_ref="PepEv_107592_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
764 <PeptideEvidenceRef peptideEvidence_ref="PepEv_108724_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
765 <PeptideEvidenceRef peptideEvidence_ref="PepEv_109824_20_366"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
766 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-21" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
767 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="38" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
768 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.7725962E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
769 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="10.908503" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
770 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
771 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
772 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
773 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
774 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
775 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
776 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1210 experiment=2" id="SIR_43">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
777 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep21" calculatedMassToCharge="596.9544067382812" experimentalMassToCharge="597.2890625" chargeState="3" id="SII_43_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
778 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49123_21_746"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
779 <PeptideEvidenceRef peptideEvidence_ref="PepEv_52029_21_778"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
780 <PeptideEvidenceRef peptideEvidence_ref="PepEv_53129_21_746"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
781 <PeptideEvidenceRef peptideEvidence_ref="PepEv_54229_21_746"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
782 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-21" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
783 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="75" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
784 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.1382256E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
785 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="12.704792" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
786 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
787 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
788 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
789 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
790 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
791 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
792 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1234 experiment=2" id="SIR_97">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
793 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep22" calculatedMassToCharge="516.2489013671875" experimentalMassToCharge="516.2442626953125" chargeState="2" id="SII_97_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
794 <PeptideEvidenceRef peptideEvidence_ref="PepEv_60589_22_15"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
795 <PeptideEvidenceRef peptideEvidence_ref="PepEv_61842_22_15"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
796 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89862_22_15"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
797 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-22" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
798 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="67" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
799 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.7559433E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
800 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="14.777384" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
801 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
802 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
803 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
804 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
805 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
806 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
807 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1212 experiment=4" id="SIR_52">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
808 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep23" calculatedMassToCharge="597.8053588867188" experimentalMassToCharge="598.3059692382812" chargeState="2" id="SII_52_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
809 <PeptideEvidenceRef peptideEvidence_ref="PepEv_64866_23_131"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
810 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-36" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
811 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="55" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
812 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.3972486E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
813 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="17.383642" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
814 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
815 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
816 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
817 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
818 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
819 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
820 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1208 experiment=2" id="SIR_37">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
821 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep24" calculatedMassToCharge="620.7595825195312" experimentalMassToCharge="621.2553100585938" chargeState="2" id="SII_37_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
822 <PeptideEvidenceRef peptideEvidence_ref="PepEv_14659_24_5155"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
823 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20228_24_3113"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
824 <PeptideEvidenceRef peptideEvidence_ref="PepEv_41550_24_3037"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
825 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-37" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
826 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="77" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
827 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.7282764E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
828 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="18.774567" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
829 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
830 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
831 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
832 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
833 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
834 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
835 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1213 experiment=5" id="SIR_57">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
836 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep25" calculatedMassToCharge="574.7989501953125" experimentalMassToCharge="575.3018188476562" chargeState="2" id="SII_57_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
837 <PeptideEvidenceRef peptideEvidence_ref="PepEv_103541_25_461"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
838 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-38" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
839 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="45" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
840 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.6226715E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
841 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="22.121838" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
842 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
843 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
844 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
845 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
846 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
847 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
848 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1230 experiment=2" id="SIR_94">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
849 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep26" calculatedMassToCharge="814.3673706054688" experimentalMassToCharge="814.3682250976562" chargeState="2" id="SII_94_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
850 <PeptideEvidenceRef peptideEvidence_ref="PepEv_60893_26_319"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
851 <PeptideEvidenceRef peptideEvidence_ref="PepEv_62146_26_319"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
852 <PeptideEvidenceRef peptideEvidence_ref="PepEv_90166_26_319"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
853 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-46" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
854 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="118" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
855 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.7173014E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
856 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="22.796595" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
857 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
858 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
859 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
860 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
861 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
862 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
863 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1217 experiment=3" id="SIR_70">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
864 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep12" calculatedMassToCharge="532.9290771484375" experimentalMassToCharge="533.2589111328125" chargeState="3" id="SII_70_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
865 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84068_12_437"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
866 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84880_12_433"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
867 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85647_12_388"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
868 <PeptideEvidenceRef peptideEvidence_ref="PepEv_93733_12_248"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
869 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-36" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
870 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="88" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
871 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.8531837E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
872 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="23.43088" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
873 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
874 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
875 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
876 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
877 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
878 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
879 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1228 experiment=3" id="SIR_89">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
880 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep27" calculatedMassToCharge="606.2744140625" experimentalMassToCharge="606.2748413085938" chargeState="2" id="SII_89_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
881 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5839_27_1240"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
882 <PeptideEvidenceRef peptideEvidence_ref="PepEv_7037_27_1185"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
883 <PeptideEvidenceRef peptideEvidence_ref="PepEv_35159_27_1287"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
884 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-43" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
885 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="36" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
886 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.191068E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
887 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="32.22694" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
888 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
889 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
890 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
891 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
892 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
893 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
894 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1218 experiment=3" id="SIR_74">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
895 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep28" calculatedMassToCharge="470.8843078613281" experimentalMassToCharge="471.2165222167969" chargeState="3" id="SII_74_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
896 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13234_28_3730"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
897 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18803_28_1688"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
898 <PeptideEvidenceRef peptideEvidence_ref="PepEv_40125_28_1612"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
899 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-39" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
900 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
901 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.438257E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
902 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="33.645863" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
903 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
904 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
905 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
906 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
907 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
908 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
909 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1216 experiment=5" id="SIR_68">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
910 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep29" calculatedMassToCharge="575.30029296875" experimentalMassToCharge="575.8047485351562" chargeState="2" id="SII_68_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
911 <PeptideEvidenceRef peptideEvidence_ref="PepEv_68089_29_2610"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
912 <PeptideEvidenceRef peptideEvidence_ref="PepEv_75630_29_2540"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
913 <PeptideEvidenceRef peptideEvidence_ref="PepEv_97028_29_2540"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
914 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-29" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
915 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="72" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
916 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.573197E-4" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
917 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="33.892418" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
918 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
919 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
920 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
921 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
922 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
923 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
924 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1200 experiment=2" id="SIR_21">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
925 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep30" calculatedMassToCharge="562.7120971679688" experimentalMassToCharge="563.2123413085938" chargeState="2" id="SII_21_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
926 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56279_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
927 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56896_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
928 <PeptideEvidenceRef peptideEvidence_ref="PepEv_57513_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
929 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58130_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
930 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58746_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
931 <PeptideEvidenceRef peptideEvidence_ref="PepEv_59343_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
932 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80035_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
933 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80652_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
934 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81269_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
935 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81886_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
936 <PeptideEvidenceRef peptideEvidence_ref="PepEv_82502_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
937 <PeptideEvidenceRef peptideEvidence_ref="PepEv_83099_30_57"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
938 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-46" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
939 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="79" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
940 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0010622585" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
941 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="41.7935" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
942 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
943 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
944 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
945 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
946 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
947 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
948 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1220 experiment=2" id="SIR_80">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
949 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep31" calculatedMassToCharge="409.7163391113281" experimentalMassToCharge="410.2142639160156" chargeState="2" id="SII_80_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
950 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44498_31_562"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
951 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-39" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
952 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="56" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
953 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0010896986" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
954 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="42.413254" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
955 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
956 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
957 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
958 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
959 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
960 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
961 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1214 experiment=5" id="SIR_61">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
962 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep32" calculatedMassToCharge="519.654296875" experimentalMassToCharge="519.6590576171875" chargeState="3" id="SII_61_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
963 <PeptideEvidenceRef peptideEvidence_ref="PepEv_66216_32_737"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
964 <PeptideEvidenceRef peptideEvidence_ref="PepEv_73757_32_667"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
965 <PeptideEvidenceRef peptideEvidence_ref="PepEv_95155_32_667"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
966 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-29" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
967 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="56" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
968 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0010936892" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
969 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="43.952087" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
970 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
971 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
972 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
973 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
974 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
975 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
976 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1219 experiment=2" id="SIR_77">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
977 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep33" calculatedMassToCharge="486.9064025878906" experimentalMassToCharge="487.2433166503906" chargeState="3" id="SII_77_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
978 <PeptideEvidenceRef peptideEvidence_ref="PepEv_105605_33_153"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
979 <PeptideEvidenceRef peptideEvidence_ref="PepEv_111726_33_153"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
980 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-38" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
981 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="80" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
982 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0013110087" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
983 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="52.68551" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
984 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
985 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
986 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
987 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
988 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
989 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
990 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1583 experiment=2" id="SIR_107">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
991 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep34" calculatedMassToCharge="487.2405090332031" experimentalMassToCharge="487.24053955078125" chargeState="2" id="SII_107_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
992 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12132_34_2628"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
993 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-48" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
994 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="53" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
995 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0025972917" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
996 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="101.66319" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
997 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
998 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
999 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1000 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1001 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
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diff changeset
1002 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1003 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1222 experiment=2" id="SIR_83">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1004 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep35" calculatedMassToCharge="581.782958984375" experimentalMassToCharge="582.2852172851562" chargeState="2" id="SII_83_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1005 <PeptideEvidenceRef peptideEvidence_ref="PepEv_70004_35_4525"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1006 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-48" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1007 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="104" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1008 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0026256246" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1009 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="103.79882" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1010 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1011 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1012 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1013 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1014 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1015 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1016 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1202 experiment=2" id="SIR_27">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1017 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep36" calculatedMassToCharge="489.2396545410156" experimentalMassToCharge="489.23614501953125" chargeState="2" id="SII_27_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1018 <PeptideEvidenceRef peptideEvidence_ref="PepEv_71899_36_6420"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1019 <PeptideEvidenceRef peptideEvidence_ref="PepEv_77400_36_4310"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1020 <PeptideEvidenceRef peptideEvidence_ref="PepEv_98798_36_4310"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1021 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-51" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1022 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="83" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1023 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0027024283" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1024 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="106.32433" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1025 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1026 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1027 <userParam value="0" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1028 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1029 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1030 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1031 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1217 experiment=2" id="SIR_69">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1032 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep37" calculatedMassToCharge="501.24359130859375" experimentalMassToCharge="501.7442626953125" chargeState="2" id="SII_69_1">
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1033 <PeptideEvidenceRef peptideEvidence_ref="PepEv_70456_37_4977"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1034 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-34" name="MS-GF:RawScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1035 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="81" name="MS-GF:DeNovoScore"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1036 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.002939024" name="MS-GF:SpecEValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1037 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="115.03928" name="MS-GF:EValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1038 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1039 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1040 <userParam value="1" name="IsotopeError"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1041 <userParam value="HCD" name="AssumedDissociationMethod"/>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1042 </SpectrumIdentificationItem>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1043 </SpectrumIdentificationResult>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1044 </SpectrumIdentificationList>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1045 </AnalysisData>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1046 </DataCollection>
dbc77b37e20f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit e6dd776a0df16d06df3bd2f230ca80c7420d9125-dirty
galaxyp
parents:
diff changeset
1047 </MzIdentML>