Mercurial > repos > galaxyp > msconvert_win
comparison msconvert_win.xml @ 0:a7be99276cf7 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit dc0103e36b921e9bcb86f9e9a402d8e6b4c47345-dirty
| author | galaxyp |
|---|---|
| date | Fri, 08 Apr 2016 15:49:36 -0400 |
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| children |
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| -1:000000000000 | 0:a7be99276cf7 |
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| 1 <tool id="msconvert_win" name="msconvert (vendor support)" version="@VERSION@.0"> | |
| 2 <description>Convert and/or filter mass spectrometry files (with vendor support on Windows)</description> | |
| 3 | |
| 4 <macros> | |
| 5 <import>msconvert_macros.xml</import> | |
| 6 </macros> | |
| 7 | |
| 8 <expand macro="msconvertCommand" /> | |
| 9 | |
| 10 <inputs> | |
| 11 <!-- TODO: add Bruker, Waters, Agilent types --> | |
| 12 <param format="mzml,mzxml,mz5,mgf,wiff,raw" name="input" type="data" label="Input unrefined MS data" /> | |
| 13 | |
| 14 <expand macro="msconvertInputParameters" /> | |
| 15 </inputs> | |
| 16 | |
| 17 <expand macro="msconvertOutput" /> | |
| 18 | |
| 19 <tests> | |
| 20 <expand macro="msconvert_tests" /> | |
| 21 | |
| 22 <test> | |
| 23 <param name="input" value="small.raw" /> | |
| 24 <param name="output_type" value="mgf" /> | |
| 25 <param name="pick_peaks" value="true" /> | |
| 26 <param name="pick_peaks_algorithm" value="vendor" /> | |
| 27 <param name="pick_peaks_ms_levels" value="1" /> | |
| 28 <output name="output" file="small-peakpicking-vendor-ms1.mgf" /> | |
| 29 </test> | |
| 30 | |
| 31 </tests> | |
| 32 <help> | |
| 33 <expand macro="msconvert_help" /> | |
| 34 </help> | |
| 35 <expand macro="citations" /> | |
| 36 </tool> |