Mercurial > repos > galaxyp > msconvert_nix

comparison test-data/small-index-filter.mzML @ 1:b00023193f6e draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d56659dd48f8c554a832787e71aca6ae65c90848
author galaxyp
date Tue, 14 Mar 2017 16:45:13 -0400
parents 5f8848c7d7b7
children
comparison
equal deleted inserted replaced
0:5f8848c7d7b7 1:b00023193f6e
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> 2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> 3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
4 <cvList count="2"> 4 <cvList count="2">
5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> 5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> 6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
18 </sourceFile> 18 </sourceFile>
19 <sourceFile id="small.mzML" name="small.mzML" location="file:///"> 19 <sourceFile id="small.mzML" name="small.mzML" location="file:///">
20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/> 20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/>
21 </sourceFile> 21 </sourceFile>
22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///"> 22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8af1e376b6ed33679f7fcf965a5e7fd6b1bf77b7"/> 23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="2d5cdd239d18de37386cf9409e30693767b16f82"/>
24 </sourceFile> 24 </sourceFile>
25 </sourceFileList> 25 </sourceFileList>
26 </fileDescription> 26 </fileDescription>
27 <referenceableParamGroupList count="1"> 27 <referenceableParamGroupList count="1">
28 <referenceableParamGroup id="CommonInstrumentParams"> 28 <referenceableParamGroup id="CommonInstrumentParams">
35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/> 35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
36 </software> 36 </software>
37 <software id="pwiz" version="3.0.8981"> 37 <software id="pwiz" version="3.0.8981">
38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> 38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
39 </software> 39 </software>
40 <software id="pwiz_3.0.8990" version="3.0.8990"> 40 <software id="pwiz_3.0.9987" version="3.0.9987">
41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> 41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
42 </software> 42 </software>
43 </softwareList> 43 </softwareList>
44 <instrumentConfigurationList count="2"> 44 <instrumentConfigurationList count="2">
45 <instrumentConfiguration id="IC1"> 45 <instrumentConfiguration id="IC1">
80 <processingMethod order="0" softwareRef="pwiz"> 80 <processingMethod order="0" softwareRef="pwiz">
81 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> 81 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
82 </processingMethod> 82 </processingMethod>
83 </dataProcessing> 83 </dataProcessing>
84 <dataProcessing id="pwiz_Reader_conversion"> 84 <dataProcessing id="pwiz_Reader_conversion">
85 <processingMethod order="0" softwareRef="pwiz_3.0.8990"> 85 <processingMethod order="0" softwareRef="pwiz_3.0.9987">
86 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> 86 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
87 </processingMethod> 87 </processingMethod>
88 <processingMethod order="1" softwareRef="pwiz_3.0.8990"> 88 <processingMethod order="1" softwareRef="pwiz_3.0.9987">
89 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/> 89 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/>
90 </processingMethod> 90 </processingMethod>
91 </dataProcessing> 91 </dataProcessing>
92 </dataProcessingList> 92 </dataProcessingList>
93 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1"> 93 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1">
494 </chromatogramList> 494 </chromatogramList>
495 </run> 495 </run>
496 </mzML> 496 </mzML>
497 <indexList count="2"> 497 <indexList count="2">
498 <index name="spectrum"> 498 <index name="spectrum">
499 <offset idRef="controllerType=0 controllerNumber=1 scan=3">5577</offset> 499 <offset idRef="controllerType=0 controllerNumber=1 scan=3">5576</offset>
500 <offset idRef="controllerType=0 controllerNumber=1 scan=4">14148</offset> 500 <offset idRef="controllerType=0 controllerNumber=1 scan=4">14147</offset>
501 <offset idRef="controllerType=0 controllerNumber=1 scan=5">26006</offset> 501 <offset idRef="controllerType=0 controllerNumber=1 scan=5">26005</offset>
502 <offset idRef="controllerType=0 controllerNumber=1 scan=11">36522</offset> 502 <offset idRef="controllerType=0 controllerNumber=1 scan=11">36521</offset>
503 <offset idRef="controllerType=0 controllerNumber=1 scan=14">47993</offset> 503 <offset idRef="controllerType=0 controllerNumber=1 scan=14">47992</offset>
504 <offset idRef="controllerType=0 controllerNumber=1 scan=15">57476</offset> 504 <offset idRef="controllerType=0 controllerNumber=1 scan=15">57475</offset>
505 <offset idRef="controllerType=0 controllerNumber=1 scan=16">65257</offset> 505 <offset idRef="controllerType=0 controllerNumber=1 scan=16">65256</offset>
506 </index> 506 </index>
507 <index name="chromatogram"> 507 <index name="chromatogram">
508 <offset idRef="TIC">76395</offset> 508 <offset idRef="TIC">76394</offset>
509 </index> 509 </index>
510 </indexList> 510 </indexList>
511 <indexListOffset>78345</indexListOffset> 511 <indexListOffset>78344</indexListOffset>
512 <fileChecksum>0d5bbd9cad4ad9471eba2e80d0ddea2cddcf3db9</fileChecksum> 512 <fileChecksum>ee644abff7e27a2bdc852562fcd0258f31fb46eb</fileChecksum>
513 </indexedmzML> 513 </indexedmzML>