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comparison README.md @ 12:5e94d5403baf draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit dade2a055b8b1bd4b3c177638e833eb2a6c65196
author galaxyp
date Mon, 10 Mar 2025 07:48:04 +0000
parents 6b6bba73eadb
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11:052798dd73dd 12:5e94d5403baf
9 Description 9 Description
10 ----------- 10 -----------
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12 msconvert from ProteoWizard. 12 msconvert from ProteoWizard.
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14 Note: This requires manual installation of ProteoWizard, and may require a Windows environment. 14 Convert and/or filter mass spectrometry files using the offical Docker container.
15 Using the Docker container requires agreeing to each vendor's license (for using their proprietary data access libraries): http://www.proteowizard.org/licenses.html
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17 Main web site: http://www.proteowizard.org
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16 See: 19 See:
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18 * <http://proteowizard.sourceforge.net/> 21 * <http://proteowizard.sourceforge.net/>
19 * <http://proteowizard.sourceforge.net/tools/msconvert.html> 22 * <http://proteowizard.sourceforge.net/tools/msconvert.html>
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22 Installing 25 #### Note about installing older versions:
23 ---------- 26
27 Version 0.3.0 (2016) and earlier require manual installation of ProteoWizard, and may require a Windows environment.
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25 Due to potential difficulties installing ProteoWizard with vendor library support, tools for interacting with vendor types are seperated out into their own wrappers. Galaxy is generally deployed under Linux, but vendor support in ProteoWizard requires .NET 4.0. There are at least two ways to get this to work: 29 Due to potential difficulties installing ProteoWizard with vendor library support, tools for interacting with vendor types are seperated out into their own wrappers. Galaxy is generally deployed under Linux, but vendor support in ProteoWizard requires .NET 4.0. There are at least two ways to get this to work:
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27 * Galaxy jobs may be configured to submit to a Windows host with ProteoWizard installed using the [LWR](https://wiki.g2.bx.psu.edu/Admin/Config/LWR). 31 * Galaxy jobs may be configured to submit to a Windows host with ProteoWizard installed using the [LWR](https://wiki.g2.bx.psu.edu/Admin/Config/LWR).
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