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comparison metaquantome_expand.xml @ 1:47bfbd6597d0 draft

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planemo upload commit 636fd1c7e60779d1123056a2985d54881013d4cb
author galaxyp
date Wed, 05 Dec 2018 14:37:17 -0500
parents b17b03126d40
children 80ce9ca55697
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0:b17b03126d40 1:47bfbd6597d0
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 mkdir -p data && #slurp 8 mkdir -p data && #slurp
9 @MAKE_SAMPS_TSV@ 9 @MAKE_SAMPS_TSV@
10 metaquantome expand 10 metaquantome expand
11 @COMMON_PARAMS@ 11 @EXPAND_PARAMS@
12 @DB_DIR@ 12 @DB_DIR@
13 #if $input.input_type == 'nopep': 13 #if $input.input_type == 'nopep':
14 --nopep --nopep_file='$input.nopep_file' 14 --nopep --nopep_file='$input.nopep_file'
15 #else: 15 #else:
16 --int_file='$input.int_file' 16 --int_file='$input.int_file'
18 #end if 18 #end if
19 --outfile='$outfile' 19 --outfile='$outfile'
20 ]]></command> 20 ]]></command>
21 <inputs> 21 <inputs>
22 <expand macro="data_dir"/> 22 <expand macro="data_dir"/>
23 <expand macro="common_params"/> 23 <expand macro="expand_params"/>
24 <conditional name="input"> 24 <conditional name="input">
25 <param name="input_type" type="select" label="Select input data"> 25 <param name="input_type" type="select" label="Select input data">
26 <option value="int">tabular intensity file with peptide column</option> 26 <option value="int">tabular intensity file with peptide column</option>
27 <option value="nopep">file without a peptide column</option> 27 <option value="nopep">file without a peptide column</option>
28 </param> 28 </param>