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comparison metaquantome_viz.xml @ 3:28180bbb8fe4 draft

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planemo upload commit 3762c462ff510cccd856f4ccd7fb87c44ad9b4e7
author galaxyp
date Thu, 06 Dec 2018 08:50:19 -0500
parents a8cb3dea93a6
children 80ce9ca55697
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2:a8cb3dea93a6 3:28180bbb8fe4
97 <expand macro="common_params"/> 97 <expand macro="common_params"/>
98 <param argument="--infile" type="data" format="tabular" label="metaquantome stats or filtered file" 98 <param argument="--infile" type="data" format="tabular" label="metaquantome stats or filtered file"
99 help=""/> 99 help=""/>
100 <conditional name="plot"> 100 <conditional name="plot">
101 <param argument="--plottype" type="select" label="Plot type"> 101 <param argument="--plottype" type="select" label="Plot type">
102 <option value="bar">Bar Charti (bar)</option> 102 <option value="bar">Bar Chart (bar)</option>
103 <option value="volcano">Volcano Plot (volcano)</option> 103 <option value="volcano">Volcano Plot (volcano)</option>
104 <option value="heatmap">Heatmap (heatmap)</option> 104 <option value="heatmap">Heatmap (heatmap)</option>
105 <option value="pca">Principal Componets Analysis (pca)</option> 105 <option value="pca">Principal Componets Analysis (pca)</option>
106 <option value="ft_dist">Functional Taxonomic Distribution (ft_dist)</option> 106 <option value="ft_dist">Functional Taxonomic Distribution (ft_dist)</option>
107 </param> 107 </param>
171 </conditional> 171 </conditional>
172 </inputs> 172 </inputs>
173 <outputs> 173 <outputs>
174 <data format="png" name="outfile" label="${tool.name} on ${on_string} ${plot.plottype}" from_work_dir="outfile.png"/> 174 <data format="png" name="outfile" label="${tool.name} on ${on_string} ${plot.plottype}" from_work_dir="outfile.png"/>
175 </outputs> 175 </outputs>
176 <tests>
177 <test>
178 <param name="infile" value="tax_filt.tab" ftype="tabular"/>
179 <param name="mode" value="t" />
180 <param name="samps_src" value="history" />
181 <param name="samps_file" value="samples.tab" ftype="tabular"/>
182 <param name="plottype" value="bar" />
183 <param name="target_rank" value="genus" />
184 <param name="meancol" value="NS_mean" />
185 <param name="nterms" value="3" />
186 <param name="barcol" value="1" />
187 <param name="width" value="3" />
188 <param name="height" value="3" />
189 <output name="outfile" file="tax_ns.png" ftype="png" compare="sim_size" delta="50000"/>
190 </test>
191 </tests>
176 <help><![CDATA[ 192 <help><![CDATA[
177 TODO: Fill in help. 193 TODO: Fill in help.
178 ]]></help> 194 ]]></help>
179 <expand macro="citations" /> 195 <expand macro="citations" />
180 </tool> 196 </tool>