Mercurial > repos > galaxyp > maxquant

diff maxquant.xml @ 17:acb539867086 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 9d6014f26ea5d3737320ec56749207e6fe602025
author galaxyp
date Sun, 13 Nov 2022 19:10:10 +0000
parents 6bb7ba55867a
children 5d013f405259
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--- a/maxquant.xml	Mon Jul 25 17:36:06 2022 +0000
+++ b/maxquant.xml	Sun Nov 13 19:10:10 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="maxquant" name="MaxQuant" version="@VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="maxquant" name="MaxQuant" version="@VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
     <macros>
         <xml name="output" token_format="tabular" token_label="default description" token_name="default">
             <data format="@FORMAT@" label="@LABEL@ for ${on_string}" name="@NAME@">
@@ -15,6 +15,8 @@
     <expand macro="requirements"/>
     <expand macro="required_files"/>
     <command detect_errors="exit_code"><![CDATA[
+    ## this is needed to avoid dotnet from crashing, in a newer dotnet version we can remove that
+    export COMPlus_EnableDiagnostics=0 &&
     #import re
     maxquant -c mqpar.xml 2>/dev/null  ## MQ writes success of creation to stderr