Mercurial > repos > galaxyp > maxquant

comparison maxquant_mqpar.xml @ 16:6bb7ba55867a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit cda481171e25f6f18c090ae491e9fb68589ffae8
author galaxyp
date Mon, 25 Jul 2022 17:36:06 +0000
parents 1a3782e58489
children acb539867086
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15:41a49d4b2bc3 16:6bb7ba55867a
11 </data> 11 </data>
12 </xml> 12 </xml>
13 <import>macros.xml</import> 13 <import>macros.xml</import>
14 </macros> 14 </macros>
15 <expand macro="requirements"/> 15 <expand macro="requirements"/>
16 <expand macro="required_files"/>
16 <command detect_errors="exit_code"><![CDATA[ 17 <command detect_errors="exit_code"><![CDATA[
17 ## link galaxy datasets to filenames accepted by maxquant 18 ## link galaxy datasets to filenames accepted by maxquant
18 #import re 19 #import re
19 #set names = [re.sub('@SUBSTITUTION_RX@', '_', str($n.element_identifier)) for $n in $input_opts.infiles] 20 #set names = [re.sub('@SUBSTITUTION_RX@', '_', str($n.element_identifier)) for $n in $input_opts.infiles]
20 #set names_with_ext = [($name if ($name).lower().endswith(str($input_opts.ftype)) else $name + str($input_opts.ftype)) for $name in $names] 21 #set names_with_ext = [($name if ($name).lower().endswith(str($input_opts.ftype)) else $name + str($input_opts.ftype)) for $name in $names]