Mercurial > repos > galaxyp > maxquant

comparison test-data/07/config.yml @ 10:68d8dcdbddb1 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 726423148e26cfb71958171851ec5ed4c307616e"
author galaxyp
date Tue, 15 Jun 2021 07:55:19 +0000
parents
children 057bf124c80e
comparison
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9:fe479bf15bd3 10:68d8dcdbddb1
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2 fastaFiles: [/tmp/tmpaa0pqa83/files/b/b/8/dataset_bb8c7384-70b6-410c-8efd-e0cfdf7cb971.dat]
3 parseRules:
4 identifierParseRule: '>([^\s]*)'
5 descriptionParseRule: '>(.*)'
6 minUniquePeptides: 0
7 minPepLen: 7
8 maxPeptideMass: 4600
9 calcPeakProperties: False
10 writeMzTab: False
11 separateLfq: False
12 lfqStabilizeLargeRatios: True
13 lfqRequireMsms: True
14 advancedSiteIntensities: True
15 matchBetweenRuns: False
16 includeContaminants: True
17 minPeptideLengthForUnspecificSearch: 8
18 maxPeptideLengthForUnspecificSearch: 25
19 decoyMode: revert
20 peptideFdr: 0.01
21 proteinFdr: 0.01
22 quantMode: 1
23 restrictProteinQuantification: True
24 restrictMods: [Oxidation (M),Acetyl (Protein N-term)]
25 useCounterparts: True
26 paramGroups:
27 - files: ['ptxqc.mzXML']
28 maxMissedCleavages: 2
29 fixedModifications: []
30 variableModifications: [Oxidation (M)]
31 enzymes: [Trypsin/P]
32 enzymeMode: 0
33 lcmsRunType: 'Reporter ion MS2'
34 reporterMassTolerance: 0.003
35 reporterPif: 0
36 reporterFraction: 0
37 reporterBasePeakRatio: 0
38 filterPif: False
39 isobaricLabels:
40
41 - [TMT10plex-Lys126C,TMT10plex-Nter126C,0,0,0,0,True]
42 - [TMT10plex-Lys127N,TMT10plex-Nter127N,0,0,0,0,True]
43 - [TMT10plex-Lys127C,TMT10plex-Nter127C,0,0,0,0,True]
44 - [TMT10plex-Lys128N,TMT10plex-Nter128N,0,0,0,0,True]
45 - [TMT10plex-Lys128C,TMT10plex-Nter128C,0,0,0,0,True]
46 - [TMT10plex-Lys129N,TMT10plex-Nter129N,0,0,0,0,True]
47 - [TMT10plex-Lys129C,TMT10plex-Nter129C,0,0,0,0,True]
48 - [TMT10plex-Lys130N,TMT10plex-Nter130N,0,0,0,0,True]
49 - [TMT10plex-Lys130C,TMT10plex-Nter130C,0,0,0,0,True]
50 - [TMT10plex-Lys131N,TMT10plex-Nter131N,0,0,0,0,True]
51
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