Mercurial > repos > galaxyp > maxquant

comparison mqwrapper.py @ 2:33c911e66d8e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 74b5aa29e49deaaebe19ce2355a70d4f570f4951"
author galaxyp
date Thu, 15 Aug 2019 08:07:52 -0400
parents 461ba35a313f
children
comparison
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1:461ba35a313f 2:33c911e66d8e
33 'modificationSpecificPeptides', 'ms3Scans', 33 'modificationSpecificPeptides', 'ms3Scans',
34 'msmsScans', 'mzRange', 'peptideSection', 34 'msmsScans', 'mzRange', 'peptideSection',
35 'summary') 35 'summary')
36 36
37 # arguments for mqparam 37 # arguments for mqparam
38 ## global 38 # global
39 global_flags = ('calc_peak_properties', 39 global_flags = ('calc_peak_properties',
40 'write_mztab', 40 'write_mztab',
41 'ibaq', 41 'ibaq',
42 'ibaq_log_fit', 42 'ibaq_log_fit',
43 'separate_lfq', 43 'separate_lfq',
49 global_simple_args = ('min_unique_pep', 49 global_simple_args = ('min_unique_pep',
50 'num_threads', 50 'num_threads',
51 'min_peptide_len', 51 'min_peptide_len',
52 'max_peptide_mass') 52 'max_peptide_mass')
53 53
54 ## parameter group specific 54 # parameter group specific
55 param_group_flags = ('lfq_skip_norm',) 55 param_group_flags = ('lfq_skip_norm',)
56 56
57 param_group_simple_args = ('missed_cleavages', 57 param_group_simple_args = ('missed_cleavages',
58 'lfq_mode', 58 'lfq_mode',
59 'lfq_min_edges_per_node', 59 'lfq_min_edges_per_node',